Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0268.Seq
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069099-1|AAL39244.1|  562|Drosophila melanogaster GH11670p pro...    31   1.1  
AE014296-1574|AAF50325.2|  562|Drosophila melanogaster CG32031-P...    31   1.1  
L05080-1|AAA28420.1|  873|Drosophila melanogaster calphotin prot...    30   1.5  
AY058315-1|AAL13544.1|  864|Drosophila melanogaster GH08002p pro...    30   1.5  
AE014297-1457|AAF54754.1|  864|Drosophila melanogaster CG4795-PB...    30   1.5  
AE014297-1456|AAF54755.1|  842|Drosophila melanogaster CG4795-PA...    30   1.5  

>AY069099-1|AAL39244.1|  562|Drosophila melanogaster GH11670p
           protein.
          Length = 562

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 112
           APT   A +PP  +P   +P  AV  P  V V  T P
Sbjct: 52  APTPKPAVVPPAPKPDPPKPAPAVAKPTPVPVPATAP 88


>AE014296-1574|AAF50325.2|  562|Drosophila melanogaster CG32031-PA,
           isoform A protein.
          Length = 562

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 112
           APT   A +PP  +P   +P  AV  P  V V  T P
Sbjct: 52  APTPKPAVVPPAPKPDPPKPAPAVAKPTPVPVPATAP 88


>L05080-1|AAA28420.1|  873|Drosophila melanogaster calphotin
           protein.
          Length = 873

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 118
           AP V AAP PP A P    P+    +P AV      PP+
Sbjct: 89  APPVVAAPTPPAASPVSTPPVAVAQIPVAVSA-PVAPPV 126


>AY058315-1|AAL13544.1|  864|Drosophila melanogaster GH08002p
           protein.
          Length = 864

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 118
           AP V AAP PP A P    P+    +P AV      PP+
Sbjct: 82  APPVVAAPTPPAASPVSTPPVAVAQIPVAVSA-PVAPPV 119


>AE014297-1457|AAF54754.1|  864|Drosophila melanogaster CG4795-PB,
           isoform B protein.
          Length = 864

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 118
           AP V AAP PP A P    P+    +P AV      PP+
Sbjct: 82  APPVVAAPTPPAASPVSTPPVAVAQIPVAVSA-PVAPPV 119


>AE014297-1456|AAF54755.1|  842|Drosophila melanogaster CG4795-PA,
           isoform A protein.
          Length = 842

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 118
           AP V AAP PP A P    P+    +P AV      PP+
Sbjct: 82  APPVVAAPTPPAASPVSTPPVAVAQIPVAVSA-PVAPPV 119


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,044,810
Number of Sequences: 53049
Number of extensions: 388140
Number of successful extensions: 1127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)