Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0268.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   3.2  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    27   5.5  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    27   9.7  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   9.7  

>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -3

Query: 115 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRC 2
           W+KRP Y  R R ++  K   LP +     + C    W C C
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCIC 608


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 434 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 342
           ++  + N ITFF  PV   G  C+L K  +R
Sbjct: 15  FLISISNVITFFEIPVCTFGAYCILFKTPER 45


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 5   PTVP-AAPIPPQARPGQAQP 61
           P++P   P+PPQ  PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 115
           AP   A PI  Q +P Q Q  QA    + + V +  PP
Sbjct: 42  APPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79



 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 112
           AP V  AP PP+ +  QAQP+Q    P  V    + P
Sbjct: 255 APVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290



 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQ 67
           APT  AAP PP+  P QA P+Q
Sbjct: 318 APT-RAAPAPPKPAPQQAPPVQ 338


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 11  VPAAPIPPQARPGQAQPLQAVLLP 82
           VP   +PPQ RP Q  P+Q    P
Sbjct: 357 VPIQTLPPQTRPPQLPPVQITQPP 380


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 11  VPAAPIPPQARPGQAQPLQAVLLP 82
           VP   +PPQ RP Q  P+Q    P
Sbjct: 454 VPIQTLPPQTRPPQLPPVQITQPP 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,008,967
Number of Sequences: 27780
Number of extensions: 210050
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)