Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0267.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    42   3e-06
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.14 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.58 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   5.4  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   5.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
 Frame = +1

Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTREL 411
           AI   + GRD+++ AQ+G+GKTA F + I+  +         + +  +   +I++PTREL
Sbjct: 188 AIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTREL 247

Query: 412 AQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
           A QI         +         GGT+   +  ++  G  ++V T
Sbjct: 248 AIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVAT 292



 Score = 24.2 bits (50), Expect = 0.76
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 167 VETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
           + +F+   L+  LL  +   G  KP+AIQ
Sbjct: 157 ITSFETSGLRPHLLENVKKSGYTKPTAIQ 185


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
 Frame = +2

Query: 17   YCG*NMSYSSERRSEDWP-----EDSKNGPSKDQGSYDGP--PGMDPGTLDTDWDQVVET 175
            YC   + ++ ER+  DWP     E+ K G      S+  P  P   P +    W     T
Sbjct: 1130 YCAGGLHWNKERKICDWPKSAKCEEKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTT 1189


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 8   PFSYCG*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 124
           PFS  G  +S S  +R++DW   S +G         GPP
Sbjct: 87  PFSSIGGGISASKRQRTDDW-LSSPSGNVPPLTPSPGPP 124


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 339  IDSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGD 437
            ID + +  +   MS+   G H   G    EGGD
Sbjct: 1155 IDPSGHISRRRSMSASSRGDHHHLGAVTEEGGD 1187


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 339  IDSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGD 437
            ID + +  +   MS+   G H   G    EGGD
Sbjct: 1155 IDPSGHISRRRSMSASSRGDHHHLGAVTEEGGD 1187


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 339  IDSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGD 437
            ID + +  +   MS+   G H   G    EGGD
Sbjct: 1155 IDPSGHISRRRSMSASSRGDHHHLGAVTEEGGD 1187


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 339  IDSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGD 437
            ID + +  +   MS+   G H   G    EGGD
Sbjct: 1155 IDPSGHISRRRSMSASSRGDHHHLGAVTEEGGD 1187


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 541 PPPHXXHSPVXN 506
           PPPH  H P  N
Sbjct: 737 PPPHPHHQPPRN 748


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 541 PPPHXXHSPVXN 506
           PPPH  H P  N
Sbjct: 629 PPPHPHHQPPRN 640


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 128 FPEVHRNYLDPSMAHFW 78
           F +V R+Y DP   ++W
Sbjct: 141 FVKVPRHYDDPGKGNYW 157


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 199 FFEVHVIEGFDNLIPVGVKCPRVHSRRSIVTTLILRW 89
           FF+ ++I G +N + + V    + +  + +T  +L W
Sbjct: 43  FFKKNLIVGSENCLVLNVYTKNLRTDTNRITQPVLFW 79


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 390 PGSHKRAGPTNSEGGDSXW 446
           PG+ K+ GP +     + W
Sbjct: 28  PGAKKKVGPIDQSAAAASW 46


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 390 PGSHKRAGPTNSEGGDSXW 446
           PG+ K+ GP +     + W
Sbjct: 28  PGAKKKVGPIDQSAAAASW 46


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 102 KVVTMDLREWTLGHLT 149
           KV T  LR W   HLT
Sbjct: 187 KVATNILRAWLFQHLT 202


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 102 KVVTMDLREWTLGHLT 149
           KV T  LR W   HLT
Sbjct: 343 KVATNILRAWLFQHLT 358


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 96  RIKVVTMDLREWTLGHLTPTGIKLSKP 176
           R  V   DLR  T G L  T   +SKP
Sbjct: 361 RSPVTPADLRLLTRGRLVLTVSSVSKP 387


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -2

Query: 469 GIXHSSDHQXLSPPSEFVGPAL 404
           G  H  DH+ L P      PA+
Sbjct: 371 GYIHDPDHRFLEPFGVMADPAV 392


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 289 HRVLGCKALLRV 254
           HRVL CK+ L++
Sbjct: 141 HRVLSCKSALQM 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,195
Number of Sequences: 336
Number of extensions: 2846
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)