Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0267.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 143 1e-35
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 131 8e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 82 5e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 66 4e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 61 1e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 60 2e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 3e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 1e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 2e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 55 6e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 8e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 51 1e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 49 5e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 7e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 5e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 5e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 5e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 39 4e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 7e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 35 0.009
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.028
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 33 0.028
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.4
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.4
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 3.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.2
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.2
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 5.6
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 143 bits (347), Expect = 1e-35
Identities = 71/97 (73%), Positives = 82/97 (84%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
RAIMP + RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV
Sbjct: 48 RAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVV 107
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+ALGD +N C ACIGGT V L++GV VVVGT
Sbjct: 108 VALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGT 144
Score = 66.9 bits (156), Expect = 2e-12
Identities = 27/42 (64%), Positives = 37/42 (88%)
Frame = +2
Query: 128 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
++ ++T++D+V++TFDDMNLK ELLRGIYAYG E+PSAIQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQ 46
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 131 bits (316), Expect = 8e-32
Identities = 66/98 (67%), Positives = 77/98 (78%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 432
+RAI+ +GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ V
Sbjct: 49 SRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNV 108
Query: 433 VIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
V+ALGDH+N C ACIGGT+V +L+ G VV GT
Sbjct: 109 VLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGT 146
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +2
Query: 128 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
M+ L T D V +F++MNLKE+LLRGIYAYG E PSA+Q
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 82.2 bits (194), Expect = 5e-17
Identities = 41/91 (45%), Positives = 56/91 (61%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H
Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+N GGT + +L V +VVGT
Sbjct: 139 MNVKVMVTTGGTTLRDDIIRLNDTVHIVVGT 169
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 80 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGXEKPSA 247
+N D+ S+ G P + + V +T F+D LK ELL GI+ G E+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 248 IQ 253
IQ
Sbjct: 70 IQ 71
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 65.7 bits (153), Expect = 4e-12
Identities = 29/57 (50%), Positives = 45/57 (78%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 210
Score = 36.7 bits (81), Expect = 0.002
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 167 VETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
V++F+++ LK ELL+GIY+ +KPS IQ
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQ 141
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 60.9 bits (141), Expect = 1e-10
Identities = 36/95 (37%), Positives = 53/95 (55%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 441
I ++GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + A
Sbjct: 38 IAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAA 97
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LG +LN +GG ++ + L VVV T
Sbjct: 98 LGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVAT 132
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 60.5 bits (140), Expect = 2e-10
Identities = 34/96 (35%), Positives = 54/96 (56%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 438
AI + RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI +
Sbjct: 76 AIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFE 135
Query: 439 ALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
A+G + +GG ++ + L V+V T
Sbjct: 136 AIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCT 171
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.7 bits (138), Expect = 3e-10
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALG 447
++GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 448 DHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+ A +GG ++ ++ L +VV T
Sbjct: 164 KGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVAT 196
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 1e-09
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 435
++G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Query: 436 IALGDHLNAXCXACIGGTNV 495
+ L A C I NV
Sbjct: 109 ----EKLTAFCSKHIRFINV 124
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 170 ETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
+TF D NL L R I+ EKP+++Q
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQ 41
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQ 426
+ I + G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q
Sbjct: 288 KTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCH 347
Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
V + + CIGG ++ + +L +V+ T
Sbjct: 348 SVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIAT 387
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 173 TFDDMNLKEELLRGIYAYGXEKPSAIQ 253
+F MNL +L+G+ G E P+ IQ
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQ 286
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 55.2 bits (127), Expect = 6e-09
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 256 RAIMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRE 408
RA +P + Q +D+I A++G+GKTA F I ++ I + E A++LAPTRE
Sbjct: 277 RAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRE 336
Query: 409 LAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LAQQIQ + L C + +GG + Q+ G +VV T
Sbjct: 337 LAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVAT 382
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.8 bits (126), Expect = 8e-09
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
I G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +
Sbjct: 86 ILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKY 145
Query: 454 L-NAXCXACIGGTNV 495
L + GG N+
Sbjct: 146 LPDVRTAVFYGGINI 160
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.2 bits (117), Expect = 1e-07
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQI 423
R+I P + GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI
Sbjct: 118 RSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177
Query: 424 QKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
V L + + IGG N +L GV ++V T
Sbjct: 178 FGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVAT 218
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +1
Query: 280 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 453
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
N + GG V + L VVV T
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPHVVVAT 249
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQI 423
+ I ++GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q
Sbjct: 68 QCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQT 127
Query: 424 QKVVIALGDHLNAXCXACIGGTN 492
+ ++ +G + IGG N
Sbjct: 128 FETLVKIGRLHSFSAGLIIGGNN 150
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 48.8 bits (111), Expect = 5e-07
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKVVIA 441
+D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI V
Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANK 238
Query: 442 LGDH-LNAXCXAC--IGGTNVP*RYXQLESGVXVVVGT 546
L ++ L+ +C IGG ++ GV +++GT
Sbjct: 239 LNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 48.4 bits (110), Expect = 7e-07
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQ 417
A+AI GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA
Sbjct: 446 AQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAV 505
Query: 418 QIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
QI + LN GG + + L+ G +VV T
Sbjct: 506 QIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCT 548
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 429
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 42.3 bits (95), Expect = 5e-05
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQI 423
A AI ++ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI
Sbjct: 29 ANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQI 88
Query: 424 QKV 432
V
Sbjct: 89 FNV 91
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 42.3 bits (95), Expect = 5e-05
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 444
+ GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259
Query: 445 GDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
N GG + V++GT
Sbjct: 260 IQGTNLKAVVVYGGAPKS-EQARAAKNASVIIGT 292
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 39.1 bits (87), Expect = 4e-04
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 438
+ GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 439 ALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G GG + L GV + + T
Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIAT 252
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 280 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQK 429
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAK 223
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 34.7 bits (76), Expect = 0.009
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 235 KTFCNPARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 414
KT+ + A AI G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 415 QQIQKVVI 438
Q +K +I
Sbjct: 370 QDQKKSLI 377
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 346 LQQIDTSIRECQALILAPTRELAQQIQK 429
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.1 bits (72), Expect = 0.028
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +1
Query: 286 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQI 423
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 33.1 bits (72), Expect = 0.028
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Frame = +1
Query: 280 GRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILAPTR 405
GRD++A AQ+G+GKTA F IL Q R +A LILAPTR
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 406 ELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
EL QI + A GG ++ + Q++ G ++ T
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSAT 312
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 310 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 426
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 117 DLREWTLGHLTPT 155
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 342 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEG 431
D+ TNR + SSFD S P+N++G
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 140 TLDTDWDQVVETFDDMNLKEELLRGIY 220
T D WD E FDD N + +GI+
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIF 307
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 146 DTDWDQVVETFDDMNLKEELLRGIYAYGXEKP--SAIQHAQ*CLASKDAMLSLKPSQELE 319
DTDWD +V + D++L+ RGI A G + + Q ++SK +LK ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673
Query: 320 KLLLSLYRFYNKS 358
L+ ++ + S
Sbjct: 674 SESLTSFKGHTDS 686
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 137 QGPFPEVHRNYLDPSMAHFWNPLANL 60
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +2
Query: 143 LDTDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQHAQ*CLASKDAMLSLKPSQELEK 322
++ + VVE FD++N + EL+R +P Q +Q L + A L K Q LE+
Sbjct: 1017 IEREVKNVVEKFDEVNDQIELMRSDVLLRKVRPGLDQTSQ--LNEESAYLE-KRIQTLER 1073
Query: 323 LLLSLYRFYNKSIQAFVN 376
L + + K + +N
Sbjct: 1074 SLEEVTPIWKKQWERELN 1091
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 458 MLNAXLALVAPMSREDIXNWRVXXMWW 538
MLN L +V P+ D+ WR+ ++
Sbjct: 690 MLNELLKMVVPLITNDVRLWRIVARYY 716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,171
Number of Sequences: 5004
Number of extensions: 47329
Number of successful extensions: 183
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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