Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0267.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 135 3e-32
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 2e-30
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 76 2e-14
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 75 4e-14
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 75 4e-14
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 68 4e-12
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 62 4e-10
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 57 1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 56 3e-08
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 55 4e-08
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 54 6e-08
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 53 1e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 45 4e-05
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 45 5e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 42 4e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 40 0.001
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 33 0.12
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 31 0.62
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_8952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 29 3.3
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 3.3
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 28 5.8
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 5.8
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 28 5.8
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 135 bits (326), Expect = 3e-32
Identities = 65/97 (67%), Positives = 79/97 (81%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
RAI P ++GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV
Sbjct: 26 RAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVV 85
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+ALGD+++ C ACIGGTN+ +L+ G +V GT
Sbjct: 86 LALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGT 122
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 129 bits (311), Expect = 2e-30
Identities = 66/97 (68%), Positives = 78/97 (80%), Gaps = 6/97 (6%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVV 435
+ RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQQIQKVV
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVV 179
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+ALGD+++ C ACIGGTNV +LE GV VVVGT
Sbjct: 180 LALGDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGT 216
Score = 68.5 bits (160), Expect = 3e-12
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +2
Query: 137 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
G ++WD+VVE+FDDMNLKE LLRGIYAYG EKPSAIQ
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQ 90
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +1
Query: 367 IRECQALILAPTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+RE QAL+L+PTRELA QIQKVV+ALGD+++ C ACIGGTN+ +L+ G +V GT
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGT 60
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 438
+I + GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I
Sbjct: 77 SIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICI 136
Query: 439 ALGDHLNAXCXACIGGTNV 495
LG H+ A GGT++
Sbjct: 137 ELGKHMGAQVMVTTGGTSL 155
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQHAQ--*CLASKDAMLSLK 301
F+D LK ELL GI+ G +KPS IQ LA +D + K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAK 92
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 438
+I + GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I
Sbjct: 77 SIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICI 136
Query: 439 ALGDHLNAXCXACIGGTNV 495
LG H+ A GGT++
Sbjct: 137 ELGKHMGAQVMVTTGGTSL 155
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQHAQ--*CLASKDAMLSLK 301
F+D LK ELL GI+ G +KPS IQ LA +D + K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAK 92
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 69.3 bits (162), Expect = 2e-12
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Frame = +1
Query: 256 RAIMPCIQ-GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQ 417
+A +P + GRD++A AQ+G+GKTA + + +L Q ++ R AL +APTRELA+
Sbjct: 507 KAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAK 566
Query: 418 QIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
QI DH C GG +VP + QLE G +VGT
Sbjct: 567 QIYIEARKFSDHTPIKVCVCYGGVSVPYQASQLERGCHFLVGT 609
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 68.1 bits (159), Expect = 4e-12
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +1
Query: 280 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 459
G D+IAQA+SGTGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H +
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
Query: 460 A-XCXACIGGTNVP*RYXQLESGVXVVVGT 546
C IGG ++ L+S + VGT
Sbjct: 110 GLACKVFIGGISLEEDKKALKS-CHIAVGT 138
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 462
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 463 XCXACIGGTNVP*RYXQLESGVXVVVGT 546
C +GG ++ + L +++ T
Sbjct: 62 KCAVIVGGIDMMSQALMLAKKPHIIIAT 89
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 447
+ G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK + LG
Sbjct: 316 MDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELG 375
Query: 448 DHLNAXCXACIGGTNV 495
+GG +V
Sbjct: 376 RFTGLKSSVILGGDSV 391
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/95 (35%), Positives = 52/95 (54%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 441
+ P +QGRD I A++G+GKTA F++ ILQ++ A++L PTRELA QI
Sbjct: 38 VPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKV 97
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LG + +GG ++ + L + VV+ T
Sbjct: 98 LGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIAT 132
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 58.0 bits (134), Expect = 5e-09
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIREC---QALILAPTRELAQQIQ 426
I GRDV+A AQ+G+GKTA F + ++ + +S E QA+ +APTRELA QI
Sbjct: 746 IAGRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIY 805
Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
C GG +V + QL+SG ++VGT
Sbjct: 806 LEARKFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGT 845
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +1
Query: 286 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
++IAQ+QSGTGKTA F +++L ++D + Q + L+PT ELA+Q KV A+G H
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 170 ETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
++F+++ L L RG+Y G KPS IQ
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQ 130
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 9/88 (10%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRE 408
+AI +Q RD+I A++G+GKTA F+I +L I + + + ALILAPTRE
Sbjct: 130 QAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRE 189
Query: 409 LAQQIQKVVIALGDHLNAXCXACIGGTN 492
LAQQI++ ++ G L + IGG +
Sbjct: 190 LAQQIEEEILKFGRPLGIRTVSVIGGAD 217
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 54.8 bits (126), Expect = 4e-08
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +1
Query: 280 GRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELAQQIQKVVIA 441
G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA+Q+
Sbjct: 110 GEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFEN 169
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
L +L C GG + + SG+ V+VGT
Sbjct: 170 LKSNLEVYC--IYGGMPYEPQENAINSGLDVLVGT 202
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 54.4 bits (125), Expect = 6e-08
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQ 420
+A+ + GRD+I A++G+GKTA F + I+ Q + + + LI APTREL QQ
Sbjct: 546 QALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQ 605
Query: 421 IQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
I G N A GG N + L+ G +VV T
Sbjct: 606 IYTEARRFGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVAT 647
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 54.4 bits (125), Expect = 6e-08
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 441
I I G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K
Sbjct: 78 IPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYER 137
Query: 442 LGDHL-NAXCXACIGGTNVP*RYXQLESGV-XVVVGT 546
++ N GG N+ L++ +VVGT
Sbjct: 138 FCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGT 174
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQH 256
F D LK ELLR I G E PS +QH
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQH 75
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 54.4 bits (125), Expect = 6e-08
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 441
I I G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K
Sbjct: 78 IPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYER 137
Query: 442 LGDHL-NAXCXACIGGTNVP*RYXQLESGV-XVVVGT 546
++ N GG N+ L++ +VVGT
Sbjct: 138 FCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGT 174
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQH 256
F D LK ELLR I G E PS +QH
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQH 75
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQI 423
+ I + GRDV+ A++G+GKT F I I++ Q TS+ AL+++PTRELA Q
Sbjct: 79 QGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQT 138
Query: 424 QKVVIALGDHLNAXCXACIGGTNV 495
+V++ +G+ + IGG ++
Sbjct: 139 FEVLVKIGNKHDLSAGLIIGGKDL 162
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQI 423
++I P ++GRD++ A++G+GKT F + +L ++ R +I++PTREL+ Q
Sbjct: 601 KSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQT 660
Query: 424 QKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
V L H N +GG N +L+ GV +++ T
Sbjct: 661 YGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGVNLLIAT 701
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQIDT--------------SIRECQ-----ALILAPTR 405
RD+I A++G+GKT F I I+Q I+ S E Q ALI+APTR
Sbjct: 169 RDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTR 228
Query: 406 ELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
ELA Q++ ++ + + A +GG P + L+ +VV T
Sbjct: 229 ELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVAT 275
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 420
A I + G+DV A A +GTGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 385 LILAPTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
L+L PTRELAQQ+Q+V ++G H GG + +LE GV + + T
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIAT 189
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +1
Query: 265 MPCIQ-GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 423
+ C+ GRD+I A++G+GKT +S+ + + T ALIL PTREL QQ+
Sbjct: 103 LSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQIQ 426
I VI AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI
Sbjct: 413 IHRHHVICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQIL 472
Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
K +L H IGG LES V ++V T
Sbjct: 473 KTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPVDLLVAT 512
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
++ C ACIGGTNV +LE GV VVVGT
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVHVVVGT 31
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 370 RECQALILAPTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
R+ A+++ PTRELA QI + N C GGT + + +L+ G ++V T
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCT 201
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/32 (53%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +1
Query: 265 MPCIQG-RDVIAQAQSGTGKTATFSISILQQI 357
+P ++G RD++A AQ+G+GKTA F I IL +I
Sbjct: 906 IPIVKGKRDLMACAQTGSGKTAAFLIPILSRI 937
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 199 RIVERHIRLWX*KTFCNPARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC 378
++VE+ ++ K +A+ + ++ ++++GTGK+ F +L + R
Sbjct: 170 KLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVF---LLPSVQDPGRGY 226
Query: 379 QALILAPTRELA-QQIQKVVIALGD 450
+I+ PTRELA Q + +V LGD
Sbjct: 227 GTIIVVPTRELASQMLYEVSRLLGD 251
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 535 PHXXHSPVXNIFTGHWCHQCKXGIXHSSDHQXLSPP 428
PH H+P FT + +C I H + H L+PP
Sbjct: 655 PHLPHTPQCATFTPYATARCIYTIRHRAQHLPLTPP 690
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 535 PHXXHSPVXNIFTGHWCHQCKXGIXHSSDHQXLSPP 428
PH H+P T + +C I H + H L+PP
Sbjct: 375 PHLPHTPQCATSTPYATARCIYTIRHRAQHLPLTPP 410
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 47 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 214
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNG 77
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 86 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 214
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_8952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQHAQ*CLASK 280
+DD +++ +L G++ + E+P A + Q C A K
Sbjct: 84 YDDCHVRHQLRAGLFGHDSEEPHAKRRIQRCQADK 118
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 375
+ G DV+A + SGT K + F ++++ D+ R+
Sbjct: 245 VNGSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1750
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -1
Query: 371 RMLVSICCRIDIEKVAVFPVPDWA*AITSRPWMQGIIARAGLQKVFXNHR-RICLSTILL 195
R+ VS+ C ++ + FP+PD + RPW + + L VF + + +
Sbjct: 652 RLNVSLSCP-ELSVMLRFPIPDLRPVVERRPWWKQAVRDESLLLVFSAFKFNTVVCSADP 710
Query: 194 *GSCHRRFRQLDP-SRCQVSQGPFPEVHRNYL 102
S RF+Q+D + P P +H + L
Sbjct: 711 AASYELRFQQMDGYYKESAGATPIPVMHSSPL 742
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 29 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 121
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 71 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 202
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 71 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 202
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 268 PCIQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQ 381
P + G D +I Q++ GKT SI QQ+DT RE Q
Sbjct: 1577 PSLMGTDEIICQSREHAGKTPPALSSIPQQLDTG-REIQ 1614
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 223 GVYASQQFFFEVHVIEGFDNLIPVGVKC 140
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKT 324
I GRDV+A AQ+G+GKT
Sbjct: 169 IAGRDVMACAQTGSGKT 185
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 468 AXSIQVITKXYHHLLNLLGQLSCGSQDQSLTFTNACID 355
A ++Q +TK Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,435
Number of Sequences: 59808
Number of extensions: 372819
Number of successful extensions: 1796
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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