Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0267.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       52   5e-09
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 51.6 bits (118), Expect = 5e-09
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
 Frame = +1

Query: 274 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQ 426
           + GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI 
Sbjct: 231 MNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIW 290

Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
           + ++    +         GGT+V  +  +L +G  ++V T
Sbjct: 291 QQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVAT 330



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 161 QVVETFDDMNLKEELLRGIYAYGXEKPSAIQ-HA 259
           Q +E+F+   L+  +L  I   G +KP+ +Q HA
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA 226


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 305 SQELEKLLLSLYRFYNKSIQAFVNV 379
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 496 GHWCHQCKXGIXHSS 452
           G  CH+CK GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 450 SLECXMPCLHWWHQCP 497
           S++     LH WH CP
Sbjct: 462 SVDALCNTLHHWHHCP 477


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/59 (20%), Positives = 28/59 (47%)
 Frame = +3

Query: 3   FFRSATAVETCLIRLKEGQKIGQRIPKMGHRRIKVVTMDLREWTLGHLTPTGIKLSKPS 179
           F R  T + + +  + E   IG++  +   + +++V  ++  +     TP   +L KP+
Sbjct: 192 FHRVCTQIGSSMKSVGEVMAIGRKFEEAFQKALRMVDENINGFDPYVKTPNDEELEKPT 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,909
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)