Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0267.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 123 9e-29
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 120 5e-28
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 117 5e-27
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 116 8e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 102 1e-22
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 77 1e-14
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 77 1e-14
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 72 2e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 72 2e-13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 69 2e-12
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 66 1e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 66 2e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 65 3e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 65 3e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 65 3e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 61 4e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 61 4e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 58 4e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 57 7e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 57 9e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 57 9e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 57 9e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 2e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 2e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 56 2e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 55 3e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 55 4e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 5e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 54 5e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 6e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 53 1e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 53 1e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 3e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 51 6e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 51 6e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 50 8e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 50 1e-06
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 50 1e-06
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 49 2e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 3e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 47 7e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 47 1e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 2e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 3e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 45 4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 7e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 43 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 43 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 3e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 41 5e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 40 8e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 40 0.001
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 39 0.002
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.003
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.003
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 37 0.010
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 36 0.018
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At3g10020.1 68416.m01202 expressed protein 29 1.5
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 1.5
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 3.6
At1g76010.1 68414.m08825 expressed protein 28 4.7
At1g22770.1 68414.m02845 gigantea protein (GI) identical to giga... 27 6.2
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 123 bits (296), Expect = 9e-29
Identities = 61/97 (62%), Positives = 74/97 (76%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
R I+P +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+
Sbjct: 70 RGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVM 129
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
ALGD+L AC+GGT+V L+SGV VVVGT
Sbjct: 130 RALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGT 166
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 140 TLDTDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
T T++D+V ++FD M L+ +LLRGIYAYG EKPSAIQ
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQ 68
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 120 bits (290), Expect = 5e-28
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
R I+P +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+
Sbjct: 68 RGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVM 127
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
ALGD+L AC+GGT+V L++GV VVVGT
Sbjct: 128 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +2
Query: 149 TDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
T +D V E+FD M L+E LLRGIYAYG EKPSAIQ
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQ 66
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 117 bits (282), Expect = 5e-27
Identities = 58/97 (59%), Positives = 73/97 (75%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
R I+P +G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+
Sbjct: 68 RGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVM 127
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
ALGD+ AC+GGT+V L++GV VVVGT
Sbjct: 128 RALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2
Query: 149 TDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
T +D+V E+FD M L+E LLRGIYAYG EKPSAIQ
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQ 66
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 116 bits (280), Expect = 8e-27
Identities = 58/97 (59%), Positives = 71/97 (73%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
RA+MP +QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K +
Sbjct: 64 RAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTI 123
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
A+G H N ACIGG +V +LE GV VV GT
Sbjct: 124 QAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGT 160
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +2
Query: 149 TDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
TD + + +F+DM +KE++LRG+Y YG EKPSAIQ
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQ 62
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 102 bits (245), Expect = 1e-22
Identities = 49/97 (50%), Positives = 68/97 (70%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 435
RA++P ++GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K +
Sbjct: 51 RALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTI 110
Query: 436 IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
A+G H N ACIGG ++ +LE GV V GT
Sbjct: 111 QAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGT 147
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 167 VETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
+++FDDM + +++LRG+Y YG +KPS IQ
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/91 (42%), Positives = 56/91 (61%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
L GGT++ +L V ++VGT
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRLYQPVHLLVGT 256
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQ 253
F+D LK ELL GIY G E+PS IQ
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQ 158
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/91 (42%), Positives = 56/91 (61%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
L GGT++ +L V ++VGT
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRLYQPVHLLVGT 256
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQ 253
F+D LK ELL GIY G E+PS IQ
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQ 158
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 72.1 bits (169), Expect = 2e-13
Identities = 37/91 (40%), Positives = 55/91 (60%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LN GGT++ +L V ++VGT
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPVHLLVGT 249
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQ 253
F+D LK +LL+GIY G EKPS IQ
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQ 151
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 72.1 bits (169), Expect = 2e-13
Identities = 37/91 (40%), Positives = 55/91 (60%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LN GGT++ +L V ++VGT
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPVHLLVGT 249
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQ 253
F+D LK +LL+GIY G EKPS IQ
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQ 151
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 68.9 bits (161), Expect = 2e-12
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 10/105 (9%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTREL 411
++P +QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTREL
Sbjct: 133 LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTREL 192
Query: 412 AQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
A+Q++K + +L+ C GG + + L GV VVVGT
Sbjct: 193 AKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGT 235
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/91 (39%), Positives = 52/91 (57%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
L GGT++ +L V ++VGT
Sbjct: 249 LKIEVMVTTGGTSLRDDIMRLYQPVHLLVGT 279
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQ 253
F+D LK +LLRGIY G EKPS IQ
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQ 181
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.7 bits (153), Expect = 2e-11
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +1
Query: 235 KTFCNPARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILA 396
K F + P ++GRD+I +A++GTGKT F I I+ +I R L+LA
Sbjct: 126 KLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLA 185
Query: 397 PTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
PTRELA+Q++K L+ C GGT + + QL+ GV V VGT
Sbjct: 186 PTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDYGVDVAVGT 233
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 64.9 bits (151), Expect = 3e-11
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +1
Query: 235 KTFCNPARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILA 396
K F + P ++GRD+I +A++GTGKT F I I+ +I + Q L+LA
Sbjct: 138 KLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLA 197
Query: 397 PTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
PTRELA+Q++K L+ C GGT + + +L G+ V VGT
Sbjct: 198 PTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNYGIDVAVGT 245
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 64.9 bits (151), Expect = 3e-11
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +1
Query: 256 RAIMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQ 426
R MP I G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q
Sbjct: 56 RKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTL 115
Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
K LG + +GG ++ ++ +L G V++ T
Sbjct: 116 KFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIAT 155
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.9 bits (151), Expect = 3e-11
Identities = 35/91 (38%), Positives = 53/91 (58%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 453
+ GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG
Sbjct: 93 LAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSC 152
Query: 454 LNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LN C +GG ++ + L S +V+ T
Sbjct: 153 LNLRCSVIVGGMDMLTQTMSLVSRPHIVITT 183
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 61.3 bits (142), Expect = 4e-10
Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 441
I I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI +
Sbjct: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVR 136
Query: 442 LGDHL-NAXCXACIGGTNVP*RYXQLESGV-XVVVGT 546
+L + GG N+ L++ +VVGT
Sbjct: 137 FSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGT 173
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQH 256
F D LK ELLR I G E PS +QH
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQH 74
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 61.3 bits (142), Expect = 4e-10
Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +1
Query: 262 IMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 441
I I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI +
Sbjct: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVR 136
Query: 442 LGDHL-NAXCXACIGGTNVP*RYXQLESGV-XVVVGT 546
+L + GG N+ L++ +VVGT
Sbjct: 137 FSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGT 173
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYAYGXEKPSAIQH 256
F D LK ELLR I G E PS +QH
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQH 74
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 58.0 bits (134), Expect = 4e-09
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +1
Query: 286 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 462
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 463 XCXACIGGTNVP*RYXQLESGV-XVVVGT 546
GG N+ L++ +VVGT
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNECPHIVVGT 90
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 57.2 bits (132), Expect = 7e-09
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQI 423
A I + GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI
Sbjct: 195 AACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI 254
Query: 424 QKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
++ L + C +GG +V + L S +VV T
Sbjct: 255 HSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVAT 295
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 170 ETFDDMNLKEELLRGIYAYGXEKPSAIQHA 259
+TF ++NL LLR G +KP+ IQ A
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAA 196
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 56.8 bits (131), Expect = 9e-09
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 441
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G C GG + LE G +VV T
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 56.8 bits (131), Expect = 9e-09
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 441
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G C GG + LE G +VV T
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 56.8 bits (131), Expect = 9e-09
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 441
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G C GG + LE G +VV T
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 429
+Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 430 VVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+ +L + +GG ++ + ++ G +V+ T
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIAT 446
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 447
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 176 FDDMNLKEELLRGIYA-YGXEKPSAIQ 253
F+D+NL EL++G+Y EKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 411
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 139 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 198
Query: 412 AQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
Q++ LG L +GG + + +++ GV +++GT
Sbjct: 199 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGT 243
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 411
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 412 AQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
Q++ LG L +GG + + +++ GV +++GT
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGT 106
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 55.2 bits (127), Expect = 3e-08
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 441
+Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ +
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G C GG + ++E GV +VV T
Sbjct: 324 FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVAT 358
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.8 bits (126), Expect = 4e-08
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 441
+Q RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ +
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529
Query: 442 LGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G C GG + +LE G +VV T
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELERGADIVVAT 564
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 54.4 bits (125), Expect = 5e-08
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILA 396
A A+ ++G+DVI AQ+G+GKT F+I ILQ + + + + A +L+
Sbjct: 37 AEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLS 96
Query: 397 PTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
PTRELA QI + ALG ++ C +GG + + L V+V T
Sbjct: 97 PTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVAT 146
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 158 DQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
++VV+TF ++ ++EEL++ G + PS IQ
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQ 36
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 54.4 bits (125), Expect = 5e-08
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQ 417
A+A+ + GRD I A++G+GKT F + +L+ I D E L++APTREL Q
Sbjct: 424 AQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQ 483
Query: 418 QIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
QI + L C GG+ V + +L+ G +VV T
Sbjct: 484 QIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCT 526
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 54.0 bits (124), Expect = 6e-08
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRE 408
AI ++GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRE
Sbjct: 189 AIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRE 248
Query: 409 LAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LA QI GGT + + +LE GV ++V T
Sbjct: 249 LASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVAT 294
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.2 bits (122), Expect = 1e-07
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQ 420
+A+ + GRD I A++G+GKT F + +L+ I D E L++APTREL QQ
Sbjct: 558 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQ 617
Query: 421 IQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
I + L C GG+ V + +L+ G +VV T
Sbjct: 618 IHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 659
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.8 bits (121), Expect = 1e-07
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 423
+ G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 424 QKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
A G L GG + P + +L+ GV +VVGT
Sbjct: 191 AADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGT 231
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 3e-07
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 420
A +I P ++G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q
Sbjct: 117 AGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQ 176
Query: 421 IQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+ V L H + IGG N ++ SG +V+ T
Sbjct: 177 TKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIAT 218
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.8 bits (116), Expect = 6e-07
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 432
A+ GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 106 ALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 50.8 bits (116), Expect = 6e-07
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Frame = +1
Query: 280 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQK 429
GRD++A AQ+G+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 183 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHD 242
Query: 430 VVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
GGT V + +LE GV ++V T
Sbjct: 243 EARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVAT 281
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.4 bits (115), Expect = 8e-07
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQ 426
+ GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
V+ G+ GG++ + + SGV +V+GT
Sbjct: 209 DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGT 248
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 438
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 439 ALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G GG + L GV +V+ T
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 438
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 439 ALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G GG + L GV +V+ T
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 48.8 bits (111), Expect = 2e-06
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 438
++GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 439 ALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
G GG + L+ GV +V+ T
Sbjct: 194 KFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.4 bits (110), Expect = 3e-06
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Frame = +1
Query: 235 KTFCNPARAIMPCI-QGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQAL 387
KT A +P I QG+D++A+A++GTGKT F + ++ + D L
Sbjct: 101 KTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVL 160
Query: 388 ILAPTRELA-QQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLE-SGVXVVVGT 546
++ PTRELA Q + I L H + IGGT +P +L+ S ++V T
Sbjct: 161 VVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVAT 215
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 47.2 bits (107), Expect = 7e-06
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 420
A+AI P + G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q
Sbjct: 182 AKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241
Query: 421 IQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
V L + + IGG L GV ++V T
Sbjct: 242 SYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVAT 283
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQ 420
+A+ + GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA Q
Sbjct: 257 QALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQ 316
Query: 421 IQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
I A GG + ++ +L++G +VV T
Sbjct: 317 IFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVAT 358
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 152 DWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQ 253
D + V+TF+D +++ I EKP+AIQ
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQ 255
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRE 408
AI + RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRE
Sbjct: 181 AIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRE 240
Query: 409 LAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LA QI GGT + + +LE G ++V T
Sbjct: 241 LACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVAT 286
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRE 408
AI + RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRE
Sbjct: 181 AIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRE 240
Query: 409 LAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
LA QI GGT + + +LE G ++V T
Sbjct: 241 LACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVAT 286
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 2e-05
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Frame = +1
Query: 259 AIMPCI-QGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTREL 411
A +P I QG+DV+A+A++GTGKT F + ++ + D+ L++ PTREL
Sbjct: 411 ATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTREL 470
Query: 412 AQQ-IQKVVIALGDHLNAXCXACIGGTNVP 498
A Q + L H + IGGT +P
Sbjct: 471 ASQAAAEANTLLKYHPSIGVQVVIGGTKLP 500
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 283 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 459
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 460 AXCXACIGGTNVP*RYXQL 516
+ +G +++ QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 426
++ + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q+
Sbjct: 147 MERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY 206
Query: 427 KVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+V ++ H GG+ + + L + + +VVGT
Sbjct: 207 RVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGT 246
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQ 420
AI ++G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ
Sbjct: 76 AIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQ 135
Query: 421 IQKVVIAL 444
+ V +L
Sbjct: 136 VYTEVSSL 143
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 43.2 bits (97), Expect = 1e-04
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Frame = +1
Query: 244 CNPARA-IMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAP 399
C P +A +P + +DV+ A +G+GKT F + ++ I S + +I++P
Sbjct: 39 CTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISP 98
Query: 400 TRELAQQIQKVVIALGDHL-NAXCXACIGGTNVP*RYXQL-ESGVXVVVGT 546
TREL+ QI KV L N +GG V L E G +++GT
Sbjct: 99 TRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGT 149
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Frame = +1
Query: 259 AIMPCI-QGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTREL 411
A +P I +G+DV+A+A++GTGKT F + ++ + D AL++ PTREL
Sbjct: 83 ATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTREL 142
Query: 412 AQQ-IQKVVIALGDHLNAXCXACIGGTNV 495
A Q + L H + IGGT +
Sbjct: 143 ANQAATEANTLLKYHPSIGVQVVIGGTRL 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQ 426
AI + GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q
Sbjct: 101 AIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTF 160
Query: 427 KVVIALGDHLNAXCXACIGG 486
V+ +G IGG
Sbjct: 161 GVLNKVGKFHKFSAGLLIGG 180
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +1
Query: 271 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 423
C+ G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTRELA QI
Sbjct: 362 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
Query: 424 QKVVIA-LGDHLNAXCXACIGGTNVP*RYXQLES 522
A L H IGGT +LES
Sbjct: 422 AAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLES 455
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.9 bits (94), Expect = 3e-04
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +1
Query: 271 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 423
C+ G+D + +A++GTGK+ F + ++L+ +++ + LIL PTRELA QI
Sbjct: 409 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
Query: 424 QKVVIA-LGDHLNAXCXACIGGTNVP*RYXQLES 522
A L +H IGGT +LES
Sbjct: 469 AAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLES 502
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.5 bits (93), Expect = 4e-04
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Frame = +1
Query: 241 FCNPARAI-MPCIQG-RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 396
FC P +A +P + +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 397 PTRELAQQIQKVVIALGDHL-NAXCXACIGGTNVP*RYXQL-ESGVXVVVGT 546
PTREL+ QI V L N +GG V + E G V++GT
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGT 149
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 41.1 bits (92), Expect = 5e-04
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELA 414
A+AI + GRDV+ A +GTGKT + ++ + + AL++ PTREL
Sbjct: 58 AQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELC 117
Query: 415 QQIQKVVIALGDHLNAXCXACI-GGTNVP*RYXQLESGVXVVVGT 546
Q+ + + L + + GG +L G+ +++ T
Sbjct: 118 LQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIAT 162
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.3 bits (90), Expect = 8e-04
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Frame = +1
Query: 259 AIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAP 399
A+ I+G D + Q+ +G+GKT + + IL +I + E QA+I+AP
Sbjct: 140 AVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAP 199
Query: 400 TRELAQQI-QKVVIALGDHLNAXCXACIGGTNVP*RYXQLESG-VXVVVGT 546
+REL QI ++V LG +GG N + L+ +VVGT
Sbjct: 200 SRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGT 250
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ--- 420
+ GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q
Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191
Query: 421 -IQKVVIALGD--HLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
+++ V +L + + CIGG ++ + ++ GV +VV T
Sbjct: 192 VVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVAT 236
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Frame = +1
Query: 244 CNPARA-IMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAP 399
C P +A +P + +DV+ A +G+GKT F + ++ I S + +I++P
Sbjct: 40 CTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISP 99
Query: 400 TRELAQQIQKVVIAL 444
TREL+ QI KV A+
Sbjct: 100 TRELSAQIHKVARAV 114
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTR 405
A A P I G+ I QSG+GKT + + ++Q++ S C + ++L PT
Sbjct: 402 AMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTA 461
Query: 406 ELAQQIQKVVIALG-DHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
ELA Q+ ++ + GG + LE GV V++ T
Sbjct: 462 ELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIAT 509
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 38.3 bits (85), Expect = 0.003
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Frame = +1
Query: 277 QGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ---------ALILA 396
QG+DVI A++G+GKT F + ILQ+ +D + E Q ALI+
Sbjct: 227 QGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIIT 286
Query: 397 PTRELAQQIQKVVIALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
PTRELA Q+ + + +L+ +GG + +L+ +VV T
Sbjct: 287 PTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVAT 336
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 36.7 bits (81), Expect = 0.010
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Frame = +1
Query: 274 IQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQK 429
+ GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q +
Sbjct: 181 LAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYE 240
Query: 430 VV------IALGDHLNAXCXACIGGTNVP*RYXQLESGVXVVVGT 546
VV + + CIGG ++ + ++ GV +VV T
Sbjct: 241 VVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 35.9 bits (79), Expect = 0.018
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 256 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 420
+AI + GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 170 QAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 385 LILAPTRELAQQIQKVVIALGDHLNAXCXACIGGT 489
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 86 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGXEKPSAIQHA 259
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 260 Q 262
+
Sbjct: 141 E 141
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Frame = +1
Query: 253 ARAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALI 390
A I + G+DVI A++G+GKT + I+ Q+ + + + +LI
Sbjct: 108 AVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLI 167
Query: 391 LAPTRELAQQIQKVVIALGD 450
L P L +Q+ ++V L D
Sbjct: 168 LCPNVMLCEQVVRMVNGLVD 187
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 5 FPFSYCG*NMSYSSERRSEDWPED--SKNG 88
FPFS+ N S +S+RR+ WP+ SKNG
Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 41 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 139
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At1g22770.1 68414.m02845 gigantea protein (GI) identical to
gigantea protein SP:Q9SQI2 from [Arabidopsis thaliana]
Length = 1173
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 224 YGXEKPSAIQHAQ*CLASKDAMLSLKPS 307
YG SAI H + LA +A+ SLKPS
Sbjct: 697 YGAGIDSAISHTRRILAILEALFSLKPS 724
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,629
Number of Sequences: 28952
Number of extensions: 261466
Number of successful extensions: 886
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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