Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0265.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56263 Cluster: PREDICTED: similar to CG11321-PA...    35   0.67 
UniRef50_Q4SN66 Cluster: Chromosome 8 SCAF14543, whole genome sh...    35   0.67 
UniRef50_Q5BGG2 Cluster: Putative uncharacterized protein; n=1; ...    34   0.89 
UniRef50_A0L6C2 Cluster: Putative uncharacterized protein; n=1; ...    34   1.2  
UniRef50_UPI000155C6BD Cluster: PREDICTED: hypothetical protein;...    33   2.7  
UniRef50_UPI00003ACDA3 Cluster: UPI00003ACDA3 related cluster; n...    32   3.6  
UniRef50_O05442 Cluster: HYPOTHETICAL ALANINE AND PROLINE RICH P...    32   4.8  
UniRef50_P88944 Cluster: ORF 56; n=6; Rhadinovirus|Rep: ORF 56 -...    31   6.3  
UniRef50_Q2N5F7 Cluster: Putative Uncharacterized protein involv...    31   6.3  
UniRef50_Q8TAP3 Cluster: Ankyrin repeat and sterile alpha motif ...    31   8.3  
UniRef50_Q7Z6G8 Cluster: Ankyrin repeat and sterile alpha motif ...    31   8.3  
UniRef50_Q7Z6G6 Cluster: AIDA-1bDAnk; n=15; Euarchontoglires|Rep...    31   8.3  
UniRef50_A7E259 Cluster: ANKS1B protein; n=7; Eutheria|Rep: ANKS...    31   8.3  

>UniRef50_UPI0000D56263 Cluster: PREDICTED: similar to CG11321-PA,
            isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
            similar to CG11321-PA, isoform A - Tribolium castaneum
          Length = 2084

 Score = 34.7 bits (76), Expect = 0.67
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 196  CTRCSSCFWSTPCSRRMVCPGTR*VE-HNCRR 104
            C +CSS F + P  RR+VCP  + V   NCRR
Sbjct: 1787 CVKCSSGFIANPRQRRLVCPDCKSVTCANCRR 1818


>UniRef50_Q4SN66 Cluster: Chromosome 8 SCAF14543, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF14543, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 485

 Score = 34.7 bits (76), Expect = 0.67
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 66  PPHE--GAAXAGRLVRRQLCSTHLVPGQTILLEQG--VLQKQELQRVQQAGRYLQPMKPL 233
           PP +  GAA  G   +    S ++ P  + +L+Q    LQ Q LQ  QQ  + LQP +PL
Sbjct: 245 PPDQRGGAAGGGAKQKSPTASQYMDPASSSVLKQQQVFLQLQILQNHQQLQQQLQPQQPL 304

Query: 234 APV 242
           A V
Sbjct: 305 AVV 307


>UniRef50_Q5BGG2 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 1411

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 214 RYRPACCTRCSSCFWST-PC--SRRMVCPGTR*VEHNCRR 104
           + RP  CTRC  CF+ T  C  S R +  G+   EHNCRR
Sbjct: 367 KQRPLQCTRCY-CFYDTRACRSSERCISCGSSKQEHNCRR 405


>UniRef50_A0L6C2 Cluster: Putative uncharacterized protein; n=1;
           Magnetococcus sp. MC-1|Rep: Putative uncharacterized
           protein - Magnetococcus sp. (strain MC-1)
          Length = 523

 Score = 33.9 bits (74), Expect = 1.2
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +3

Query: 120 STHLVPGQTILLEQGVLQKQELQRVQQAGRYLQPMKPLAPVF 245
           S+H V     L+E G+ Q + L+RV Q+GR++Q + PLA  F
Sbjct: 431 SSHEVALDLSLMEYGIYQ-EALERVLQSGRFVQQVAPLAERF 471


>UniRef50_UPI000155C6BD Cluster: PREDICTED: hypothetical protein;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein - Ornithorhynchus anatinus
          Length = 670

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 138 QVQDEWSTTAA-APACLPPQRPRGVDPLKTG--VLHKYSALVP 19
           +VQ  WST  +  P    P +PRGVDPL  G  V  +Y AL P
Sbjct: 507 EVQRRWSTWESWEPQAGVPGQPRGVDPLPRGTVVRKEYFALQP 549


>UniRef50_UPI00003ACDA3 Cluster: UPI00003ACDA3 related cluster; n=1;
           Gallus gallus|Rep: UPI00003ACDA3 UniRef100 entry -
           Gallus gallus
          Length = 89

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 208 RPACCTRCSSCFWSTPCSRRMVCP 137
           +P CCT  ++C W TPC +    P
Sbjct: 60  QPLCCTEAATCSWITPCVKVQESP 83


>UniRef50_O05442 Cluster: HYPOTHETICAL ALANINE AND PROLINE RICH
           PROTEIN; n=6; Mycobacterium tuberculosis complex|Rep:
           HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN -
           Mycobacterium tuberculosis
          Length = 846

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 132 QDEWSTTAAAPACLPPQRPRGVDPLKTG 49
           Q +W+TT AAPA  P   P GV   ++G
Sbjct: 568 QPQWATTPAAPAAAPHSTPGGVHSTESG 595


>UniRef50_P88944 Cluster: ORF 56; n=6; Rhadinovirus|Rep: ORF 56 -
           Human herpesvirus 8 type M
          Length = 843

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 128 MSGAQLPPHQPACXRSALVGWIRSRLXCCINTLH 27
           + GA+ PP+Q AC   + V W+R++    +  L+
Sbjct: 120 IGGARAPPNQDACTFQSQVAWLRTKFVTALRKLY 153


>UniRef50_Q2N5F7 Cluster: Putative Uncharacterized protein involved
           in ubiquinonebiosynthesis; n=2; Erythrobacter|Rep:
           Putative Uncharacterized protein involved in
           ubiquinonebiosynthesis - Erythrobacter litoralis (strain
           HTCC2594)
          Length = 230

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 146 GLPRYKMSGAQLPPHQPACXRSALVGWIRSRLXCCINTLHWFHNI 12
           G+P+ K+  AQLP       R+A   W R R    + T +W  N+
Sbjct: 152 GIPKMKLEAAQLP-----VARAAFEAWRRGRAAADLTTFYWEENL 191


>UniRef50_Q8TAP3 Cluster: Ankyrin repeat and sterile alpha motif
           domain containing 1B; n=7; Eutheria|Rep: Ankyrin repeat
           and sterile alpha motif domain containing 1B - Homo
           sapiens (Human)
          Length = 510

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 24  PVQSIYAAXQS*ADPPHEGAAXAGRLVRRQLCSTHLVPGQTILLEQGVLQKQELQRVQQA 203
           PVQ++    +S   P +E    A      Q   ++++  Q  LLE G+L     QR+ QA
Sbjct: 37  PVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQD-LLEIGILNSGHRQRILQA 95

Query: 204 GRYLQPMKPL 233
            + L  M+P+
Sbjct: 96  IQLLPKMRPI 105


>UniRef50_Q7Z6G8 Cluster: Ankyrin repeat and sterile alpha motif
            domain-containing protein 1B; n=45; Euteleostomi|Rep:
            Ankyrin repeat and sterile alpha motif domain-containing
            protein 1B - Homo sapiens (Human)
          Length = 1249

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 24   PVQSIYAAXQS*ADPPHEGAAXAGRLVRRQLCSTHLVPGQTILLEQGVLQKQELQRVQQA 203
            PVQ++    +S   P +E    A      Q   ++++  Q  LLE G+L     QR+ QA
Sbjct: 812  PVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQD-LLEIGILNSGHRQRILQA 870

Query: 204  GRYLQPMKPL 233
             + L  M+P+
Sbjct: 871  IQLLPKMRPI 880


>UniRef50_Q7Z6G6 Cluster: AIDA-1bDAnk; n=15; Euarchontoglires|Rep:
           AIDA-1bDAnk - Homo sapiens (Human)
          Length = 750

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 24  PVQSIYAAXQS*ADPPHEGAAXAGRLVRRQLCSTHLVPGQTILLEQGVLQKQELQRVQQA 203
           PVQ++    +S   P +E    A      Q   ++++  Q  LLE G+L     QR+ QA
Sbjct: 373 PVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQD-LLEIGILNSGHRQRILQA 431

Query: 204 GRYLQPMKPL 233
            + L  M+P+
Sbjct: 432 IQLLPKMRPI 441


>UniRef50_A7E259 Cluster: ANKS1B protein; n=7; Eutheria|Rep: ANKS1B
           protein - Homo sapiens (Human)
          Length = 450

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 24  PVQSIYAAXQS*ADPPHEGAAXAGRLVRRQLCSTHLVPGQTILLEQGVLQKQELQRVQQA 203
           PVQ++    +S   P +E    A      Q   ++++  Q  LLE G+L     QR+ QA
Sbjct: 37  PVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQD-LLEIGILNSGHRQRILQA 95

Query: 204 GRYLQPMKPL 233
            + L  M+P+
Sbjct: 96  IQLLPKMRPI 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,536,427
Number of Sequences: 1657284
Number of extensions: 4435139
Number of successful extensions: 13442
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13433
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)