Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0265.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   2.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 146 GLPRYKMSGAQLPPHQPACXRSALV 72
           G+P     G  LPP  PA   +AL+
Sbjct: 114 GVPTLSPVGVALPPTLPAAAAAALL 138


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 171 QKQELQRVQQAGRYLQPMKPLAPVFHS 251
           Q+Q    +  A   L+P   L+P+FHS
Sbjct: 94  QQQAGANMAAAANLLRPHPYLSPLFHS 120


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 100 WCGGSCAPLILYLGRPFF 153
           W    C+P  L +G PF+
Sbjct: 252 WVDYGCSPKKLIVGIPFY 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,001
Number of Sequences: 336
Number of extensions: 1112
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)