Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0265.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   4.3  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    24   7.6  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   10.0 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    24   10.0 

>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 ELQRVQQAGRYLQPMKPLAPVFHSXFMDRSNY 275
           EL  V +AG  ++ M PL  V +   M+RS Y
Sbjct: 126 ELLEVDEAGEKVRRMIPLVRVDNKSVMERSVY 157


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 156 QEEWSAQVQDEWSTTAAAPACLPPQRPRGVDPLKTGVLHKYSALVP 19
           +E+ +++        A  P     Q+P GV  + TGV  K  + VP
Sbjct: 108 REKQNSEATPAVQPPATCPMSNSNQKPAGVSEVLTGVDSKQQSYVP 153


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 198 QAGRYLQPMKPLAPVFHSXFMD 263
           ++G+YL+P+ P AP   +  MD
Sbjct: 84  KSGKYLKPVDPNAPKAANPLMD 105


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 205 PACCTRCSSCFWSTP 161
           P CC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,465
Number of Sequences: 5004
Number of extensions: 16618
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)