Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0265.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   1.0  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   2.4  
04_03_0536 - 16875813-16876087,16877023-16877091,16877134-168772...    28   3.1  
12_02_1057 + 25733376-25735439                                         27   7.2  
04_03_0663 - 18487295-18487795                                         27   7.2  
11_03_0197 - 11499012-11499318,11499353-11499489                       26   9.5  
02_02_0210 + 7873962-7874753                                           26   9.5  
02_02_0209 + 7866348-7867139                                           26   9.5  

>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 193 TRCSSCFWSTPCSRRMVCPGTR*VEHN 113
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 193 TRCSSCFWSTPCSRRMVCPGTR 128
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 193 TRCSSCFWSTPCSRRMVCPGTR*VEHN 113
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>04_03_0536 -
           16875813-16876087,16877023-16877091,16877134-16877292,
           16877307-16877636,16878764-16879030,16880033-16880077,
           16880159-16880261
          Length = 415

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 128 MSGAQLPPHQPACXRSALVGWIRSRLXCCINTLHW 24
           + G Q P  Q AC    L+G  R  L   ++  HW
Sbjct: 261 IEGQQYPTFQAACQAPGLLGDDREWLSAIVDAAHW 295


>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 193 TRCSSCFWSTPCSRRMVCPGTR*VEHN 113
           T+C  C    P     VCPG+R  + N
Sbjct: 93  TQCQECLAGAPAGIVQVCPGSRTADAN 119


>04_03_0663 - 18487295-18487795
          Length = 166

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 123 THLVPGQTILLEQGVLQKQELQRVQQAG 206
           T + P QT + +Q   QKQ  QR+Q+ G
Sbjct: 63  TQIKPNQTKIKQQEENQKQSSQRIQKLG 90


>11_03_0197 - 11499012-11499318,11499353-11499489
          Length = 147

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 21  EPVQSIYAAXQS*ADPPHEGAAXAGRLVRRQLCSTHLVPG 140
           EPV+++       A    E AA  GR  RRQ C   +V G
Sbjct: 15  EPVRALVGTRPGAAISSTEAAAALGRWKRRQSCRIPVVGG 54


>02_02_0210 + 7873962-7874753
          Length = 263

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 214 RYRPACCTRCSSCFWSTP--CSRRMVCPG 134
           R++PA   R     W+TP  C RR  C G
Sbjct: 31  RWQPAAAARRKGTAWNTPLRCWRRWWCSG 59


>02_02_0209 + 7866348-7867139
          Length = 263

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 214 RYRPACCTRCSSCFWSTP--CSRRMVCPG 134
           R++PA   R     W+TP  C RR  C G
Sbjct: 31  RWQPAAAARRKGTAWNTPLRCWRRWWCSG 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,790,097
Number of Sequences: 37544
Number of extensions: 136537
Number of successful extensions: 472
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)