Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0265.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17360.1 68414.m02116 COP1-interacting protein-related simila...    29   1.5  
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763...    28   2.6  

>At1g17360.1 68414.m02116 COP1-interacting protein-related similar to
            COP1-Interacting Protein 7 (CIP7) (GI:3327870)
            [Arabidopsis thaliana]
          Length = 1032

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 147  WSAQVQDEWSTTAAAPACLPPQR 79
            WS++++ +W TTA +P  +P  R
Sbjct: 934  WSSRMRKKWGTTAQSPVIVPNSR 956


>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
           Dehydrin ERD14 {Arabidopsis thaliana}
          Length = 185

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 129 DEWSTTAAAPACLPPQRPRGVDPLKTGVLHKYSALVP*YYMK 4
           ++ S  AAAP  +PP         K G+L K    +P Y+ K
Sbjct: 133 EDGSAVAAAPVVVPPPVEEAHPVEKKGILEKIKEKLPGYHPK 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,678,571
Number of Sequences: 28952
Number of extensions: 96833
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)