Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0264.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    30   0.12 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   5.7  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   5.7  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    24   10.0 

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 159 HKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWIXRCL 1
           HK   HQ Y I+RC    +   N   M     DC    HK CY ++  + +C+
Sbjct: 406 HKFLQHQFYQIMRCALCGEFLKNAAGMQCI--DCHYTCHKKCYPKV--VTKCI 454


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 7   AXDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVV---AALMDTVPTV 177
           A + E+     + D  PT+   VY      V     Q +  PVH ++   A ++DT  T+
Sbjct: 638 ASETENENTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHSLITGPAVIVDTTQTL 697

Query: 178 VMK 186
           +++
Sbjct: 698 LIE 700


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 100 TLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVT 216
           T+  +Q+  +  HL +A+ +      V+ VY P A+  T
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187



 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   QTAXDPEHLAVAALMDTVPTVVMEVYHPPAVPVT 102
           Q+  +  HLA+A+ +      V+ VY P A+  T
Sbjct: 154 QSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   TAXDPEHLAVAALMDTVP-TVVMEVYHPPAVPVTLVQTQTAQ 126
           TA + + L     +D+ P  V +E Y  P VPV +    TAQ
Sbjct: 6   TAHEFDDLPKIEFIDSCPYQVFLEQYLKPCVPVLIGPKLTAQ 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,124,353
Number of Sequences: 5004
Number of extensions: 19849
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)