Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0264.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153...    35   0.027
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    29   1.0  
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160...    27   4.1  
03_01_0542 + 4071906-4072241,4073093-4073184,4073275-4073317,407...    27   4.1  
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578...    27   7.2  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    27   7.2  

>01_05_0482 +
           22614097-22614729,22614859-22615182,22615291-22615396,
           22615628-22615668
          Length = 367

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +1

Query: 19  EHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTV 177
           E +AVAA +   P     V+ P A  +TL+    A DP+  VVA  MD V TV
Sbjct: 2   EDVAVAAALAPAPATA-PVFSPAAAGLTLIAAAAA-DPIAAVVAGAMDGVVTV 52


>03_01_0085 +
           690618-691012,691114-691193,691775-691959,692363-693320,
           693391-693518,693951-694010,694113-694163,694704-694821,
           694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -1

Query: 210 WNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCI 46
           WNC W  H    C   +H  CY   Y + +       +++ R    F   C++ I
Sbjct: 156 WNCGW--HICSSCEKAVHYMCYTCTYSLCKVCIKQGKFFSVRGTKGFCDTCYSTI 208


>03_06_0407 -
           33714563-33714636,33714966-33715152,33715943-33716093,
           33716520-33716632,33717022-33717085,33717180-33717391,
           33717540-33717621,33717811-33717866,33718004-33718072,
           33718524-33718772,33718873-33719049,33719556-33719702,
           33719794-33719926,33720093-33720307
          Length = 642

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 55  PTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQT 234
           PT +   Y P  VP+T+V T ++ +    ++A        V+      PA   TL R+ T
Sbjct: 50  PTRLPADYFPDRVPITIVDTSSSPEHRAKLIAECQAADAVVLTYACDRPA---TLERLST 106

Query: 235 AXXPGNPRLXL 267
              P   RL L
Sbjct: 107 FWLPELRRLQL 117


>03_01_0542 +
           4071906-4072241,4073093-4073184,4073275-4073317,
           4073601-4073720,4073785-4073949,4074042-4074163,
           4074357-4074476,4074645-4074936
          Length = 429

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  DPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVP--TVVMK 186
           D   L   ++ + + T    VYH   VP  LV  +     VH+ +   M  +P  TV  K
Sbjct: 172 DLHALFFKSIKEQIITSFRWVYHLYFVPFVLVDPENMTGMVHVKLDRAMQPLPLTTVYHK 231

Query: 187 VYHPPAVPVTLIRIQTAXXPGNP 255
           +    + P TL   QT    G P
Sbjct: 232 LTPVDSTPYTL--FQTIIGNGYP 252


>07_01_0752 -
           5783305-5783416,5783739-5783836,5784550-5784675,
           5784890-5785090,5785185-5785268,5785519-5785566,
           5785709-5785763,5786130-5786185,5786281-5786365,
           5786485-5786558,5787093-5787159,5788134-5788216
          Length = 362

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 150 CYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHK 40
           CY ++Y   R L   QC+    W I  H++  N  HK
Sbjct: 187 CYKEIY---RVLKPGQCFAVYEWCITDHYEPNNATHK 220


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -1

Query: 189 HFHHDCWNC--IHKCCYHQMYWILRCL 115
           HF+ +CWNC      CY    W L+ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,788
Number of Sequences: 37544
Number of extensions: 140749
Number of successful extensions: 331
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)