Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0264.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 35 0.021
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 32 0.15
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 32 0.20
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 31 0.35
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 2.4
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 28 2.4
SB_40994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1) 27 5.6
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 27 7.4
SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18) 27 7.4
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 26 9.8
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 183 HHDCWNCIHKCCY-HQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWIXR 7
H+ C+ H CCY H Y C + Y C + H+H+ C+ + CYR + R
Sbjct: 13 HNRCYRHHHYCCYCHHRY----CYYRHHHY--CWYRHHYHYPCYRHYYHRCYRHHYCCYR 66
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1
Query: 73 VYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
V H P V VTLV+ +A++ VH+ + + V T+ V H P V VTL+++ +A
Sbjct: 343 VVHIPLV-VTLVKVTSAKEVVHIPLVVTLVKV-TIAKVVVHIPLV-VTLVKVTSA 394
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 58 TVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
T EV H P V VTL++ +A++ VH+ + + V T V H P V VTL+++ +A
Sbjct: 212 TSAKEVVHIPLV-VTLLKVTSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSA 268
Score = 30.7 bits (66), Expect = 0.46
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1
Query: 73 VYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
V H P V VTLV+ +A++ VH+ + + V T +V H P V VTL+++ +A
Sbjct: 199 VVHIPLV-VTLVEVTSAKEVVHIPLVVTLLKV-TSAEEVVHIPLV-VTLLKVTSA 250
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 73 VYHPPAVPVTLVQTQTAQDPVHL-VVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
V H P V VTLV+ +A+ VH+ +V L++ VM H P V VTL+++ +A
Sbjct: 145 VVHIPLV-VTLVEVTSAKVVVHIPLVVTLVNVTSAKVM--VHIPLV-VTLVKVTSA 196
Score = 28.7 bits (61), Expect = 1.8
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +1
Query: 4 TAXDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
+A + H+ + + V T V H P V VTLV+ +A+ VH+ + + V T
Sbjct: 231 SAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSAELVVHIPLVVTLVEV-TSAK 287
Query: 184 KVYHPPAVPVTLIRIQTA 237
V H P V VTL+++ +A
Sbjct: 288 VVVHIPLV-VTLVKVTSA 304
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 73 VYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
V H P V VTL++ +A++ VH+ + + V T V H P V VTL+ + +A
Sbjct: 73 VVHIPLV-VTLLKATSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVEVTSA 124
Score = 28.3 bits (60), Expect = 2.4
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +1
Query: 4 TAXDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
+A + H+ + + V T V H P V VTLV+ +A+ VH+ + + V + +
Sbjct: 87 SAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVEVTSAKVMVHIPLVVTLVKVTSAEL 144
Query: 184 KVYHPPAVPVTLIRIQTA 237
V H P V VTL+ + +A
Sbjct: 145 -VVHIPLV-VTLVEVTSA 160
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 31.9 bits (69), Expect = 0.20
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 174 CWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 34
C+ + CY+ Y+ C CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -1
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C CRW + D C C + + R ++ C CRW + D C C
Sbjct: 94 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 149
Query: 36 CYR 28
+R
Sbjct: 150 RWR 152
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -1
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C CRW + D C C + + R ++ C CRW + D C C
Sbjct: 111 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 166
Query: 36 CYR 28
+R
Sbjct: 167 RWR 169
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = -1
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C CRW + D C C + + R ++ C CRW I+ D C C
Sbjct: 128 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRCKSTC 183
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/63 (23%), Positives = 22/63 (34%)
Frame = -1
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C C W + D C C + + R ++ C CRW + D C C
Sbjct: 77 CKSTCPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 132
Query: 36 CYR 28
+R
Sbjct: 133 RWR 135
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -1
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMI 76
C CRW + D C C + I R +++C CRW +
Sbjct: 145 CKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 138 MYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 34
M + C N C +NC H+ + +C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 234 CLNSNQCYWNCRWMIHFHHDCWNCIHKCC 148
C +N C +NC H+ + +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 25 LAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPA 204
+ V+ ++ V VV+ V VPV +V V +VV ++ V V + V PA
Sbjct: 1350 VVVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPA 1409
Query: 205 VPVTLI 222
V V LI
Sbjct: 1410 VVVVLI 1415
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 25 LAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPA 204
+ V+ ++ V VV+ V VPV +V V +VV ++ V V + V PA
Sbjct: 365 VVVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPA 424
Query: 205 VPVTLI 222
V V LI
Sbjct: 425 VVVVLI 430
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 4 TAXDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAAL 156
+A P HL A+ + P ++ +HP P L+Q + VH+VV L
Sbjct: 606 SAATPSHLGKVAVEEKRPRLLRSEFHPRRSP--LLQLLSNTPDVHVVVVEL 654
>SB_40994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 225 SNQCYWNCRWMIHFHHDCWNCI-HKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNC 49
S QC N ++ ++ C N I ++ C Q+ ++ + +QC N ++ ++ C N
Sbjct: 42 SAQCGNNIKYQLYVSAQCGNNIRYQLCMFQLSVVMISSTNSQCGNNIQYQLYVSAQCGNN 101
Query: 48 IHKCCY 31
I Y
Sbjct: 102 IRYQLY 107
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 16 PEHLAVAA--LMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKV 189
P LA+ + + T + + +P A+P+T ++L + + T P++ +
Sbjct: 210 PTALAITSPIIYPTALPITSPIIYPTALPITSPTIYHTALTINL--SNYLPTAPSITSPI 267
Query: 190 YHPPAVPVT 216
+P A+P+T
Sbjct: 268 IYPTALPIT 276
>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
Length = 338
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 55 PTVVMEVYHPPAVPVTLVQTQTAQDPVH 138
P V E++HPP V V Q PVH
Sbjct: 5 PIVAPEIHHPPQVVVHTPYEQQQLTPVH 32
>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 49 TVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMK--VYHPPAVPVTL 219
TVP VV V + +P +V +Q P+ V ++ TVP VV+ V+ P V T+
Sbjct: 64 TVPNVVFTVPNVYYIPNVVVPNVYSQYPMWYSVPNVVFTVPNVVVTNVVFTVPNVVFTV 122
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 28 AVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAV 207
++ L+ VP++ V H P++ ++ Q + + V V + T V K P AV
Sbjct: 321 SIKTLVTQVPSIKTSVTHVPSIKTSVTQVPSGKTSVTQVPSG--KTRHAVSFKQDIPDAV 378
Query: 208 PVTL 219
P+ L
Sbjct: 379 PIPL 382
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 26.6 bits (56), Expect = 7.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 100 TLVQTQTAQDPVHLVVA--ALMDTV----PTVVMKVYHPPAVPVTLIRIQTAXXPGNPRL 261
T +TQ+ Q P L+V +L D V P V ++ P +PV + ++T PG P +
Sbjct: 1117 TAYRTQSLQTPRQLIVEVDSLPDPVTPLVPPVKVRRLIPTGLPVGVSPVKTEGYPGAPMI 1176
>SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18)
Length = 101
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 225 SNQCYWNCRWMIHF-HHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNC 49
+ +C N +WM H+ C C+ C + + +C N R+M H +C
Sbjct: 44 AGECQRNTKWMFHYCPVSCGICV---CGDNNPECAKWATQGECSRNARFM---HQNCKRS 97
Query: 48 IHKC 37
+KC
Sbjct: 98 CNKC 101
>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 25 LAVAALMDTVPTVVMEVYHPPAV 93
+++ AL++ + T +++ YHPPA+
Sbjct: 76 ISLEALIECICTALLDSYHPPAL 98
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 26.2 bits (55), Expect = 9.8
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = +1
Query: 16 PEHLAVAALMDTVPTVVMEVYHP-----PAVPVTLVQTQTAQDPVHLVVAALMDTVPTVV 180
P L++ L+ P + P P +P T Q+ P+ L+ + T+P
Sbjct: 606 PLPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
Query: 181 MKVYHPPAVPVTLIRIQTAXXP 246
V HP A P L R+ T P
Sbjct: 666 PTVRHPQATP--LPRLATHPPP 685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,664
Number of Sequences: 59808
Number of extensions: 166587
Number of successful extensions: 419
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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