Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0264.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.060
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.060
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.1  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 0.060
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 174 CWNCIHKCCYHQMYWILRCLS-LNQCYW 94
           C NCIH   +  ++W+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62



 Score = 27.1 bits (57), Expect = 0.079
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 60 CWNCIHKCCYRQMFWIXRC 4
          C NCIH   +  +FW+  C
Sbjct: 35 CRNCIHPTVFSVLFWLGYC 53


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 0.060
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 174 CWNCIHKCCYHQMYWILRCLS-LNQCYW 94
           C NCIH   +  ++W+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510



 Score = 27.1 bits (57), Expect = 0.079
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 60  CWNCIHKCCYRQMFWIXRC 4
           C NCIH   +  +FW+  C
Sbjct: 483 CRNCIHPTVFSVLFWLGYC 501


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -1

Query: 204 CRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWN 91
           CR+  H    C  C    C  +M     C   N   WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 150 CYHQMYWIL 124
           C++ MYWI+
Sbjct: 418 CFNLMYWII 426


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 150 CYHQMYWIL 124
           C++ MYWI+
Sbjct: 418 CFNLMYWII 426


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 150 CYHQMYWIL 124
           C++ MYWI+
Sbjct: 356 CFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,883
Number of Sequences: 438
Number of extensions: 1311
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)