Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0264.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    32   0.16 
At1g69280.1 68414.m07943 expressed protein                             31   0.37 
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    29   0.86 
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si...    28   2.0  
At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    27   6.1  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    26   8.0  

>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 165 CIHKCCYHQMY-WILR-CLSLNQCYWNCRWMI-HFHHDCWNCIH 43
           C   C +H+++ W+++ C+   + +W  + +  H HH  W+ +H
Sbjct: 292 CFIICKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = -1

Query: 249 SWXXRCLNSNQCYWNCRW-MIHFHHDCWNCIHKC-CYHQMYWILRCLSLNQCYWN--CRW 82
           SW   C N+  C+  CR     ++  C   +  C C+    W         C +N  C W
Sbjct: 301 SWLC-CKNTGPCFSCCRLPSCGYNFFCCKRLKCCPCFSWCRW-------PSCDYNSSCGW 352

Query: 81  MIHFHHDCWNCIHKCC 34
           +   H  CW+C   CC
Sbjct: 353 LFCCHWSCWSCC--CC 366


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 189 HFHHDCWNCIHKCCYHQMYW 130
           HFHH   +C H  CY   YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 302 HFHHDSXNCLHESXNRGFPGSXAV 231
           HFHH S +C H   N+ + GS  V
Sbjct: 322 HFHHSSCSCYHCYDNKYWRGSAPV 345



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 75  HFHHDCWNCIHKCCYRQMFW 16
           HFHH   +C H  CY   +W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 168

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
           C  +CR ++   ++C  C HKC + Q     RC     C   C ++    + C  C  KC
Sbjct: 105 CKKHCRNVLGDRNNCGRCGHKCGFGQ-----RC-----CGGVCTYVNFNPNHCGKCTRKC 154


>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = -1

Query: 249 SWXXRCLNSNQCYWNCRWMIHFHHDC-----WNCIHKCCYHQMYWILRCLSLNQCYWNCR 85
           S+   CL S+   WNC    H   DC     W   +      M WIL   +   C   C+
Sbjct: 238 SYDVSCLCSHSFCWNCTEEAHRPVDCDTVGKWILKNSAESENMNWIL--ANSKPCP-KCK 294

Query: 84  WMIHFHHDCWN--CIHKCCYRQMFWI 13
             I  +H C +  C   C + +  W+
Sbjct: 295 RPIEKNHGCMHMTCTPPCKF-EFCWL 319


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 111 LNQCYWNCRWM-IHFHHDCWNCIHKCCYRQM 22
           L   Y+  R   IH++ + +NC+  CC R +
Sbjct: 648 LQHLYYRIRKSGIHWNQEMYNCVINCCARAL 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,045,876
Number of Sequences: 28952
Number of extensions: 107519
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)