Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0263.Seq
         (359 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313480-1|AAG29546.1| 2797|Drosophila melanogaster gamma dynein...    28   4.1  

>AF313480-1|AAG29546.1| 2797|Drosophila melanogaster gamma dynein
            protein.
          Length = 2797

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 252  CIVRELLPPKNRTDSLRLT*GIIFFCSDKFGY*ITRVVP 136
            CI    LP  N  D +  + G  +F  D+FG  +  V+P
Sbjct: 1118 CIFNCTLPSNNSMDQIFKSIGAGYFSPDRFGDEVVEVIP 1156


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,113,956
Number of Sequences: 53049
Number of extensions: 163704
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 901135692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)