Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0263.Seq
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81483-1|CAB03963.1|  307|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical
           protein T11F9.6 protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 75  FNLLTHLYFFNNNFNWL--QA*LGLRE*FSNQTCL 173
           FN   H YF+  NF++   ++ L   E  SN TC+
Sbjct: 55  FNNTVHYYFYEENFDFTVKESILRAMELISNHTCI 89


>Z81483-1|CAB03963.1|  307|Caenorhabditis elegans Hypothetical
           protein C43D7.2 protein.
          Length = 307

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   IYFIKGTHLR*IFKPTQIIQGQCFNLLTHLYFFNNNFNWLQA 131
           IY   G     + +  + + G  FNLL  L FF+ NF   Q+
Sbjct: 257 IYRFDGERAIVVQEDRRTLGGDFFNLLFSLNFFSENFRKFQS 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,822,507
Number of Sequences: 27780
Number of extensions: 89702
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)