Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0262.Seq
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 155 4e-37
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 142 4e-33
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 129 3e-29
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 118 7e-26
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 109 4e-23
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 6e-23
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 91 2e-17
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 89 5e-17
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 87 2e-16
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 79 5e-14
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 76 4e-13
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 76 4e-13
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 75 7e-13
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 72 8e-12
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 68 1e-10
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 58 8e-08
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 56 6e-07
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 54 2e-06
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 50 3e-05
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 36 0.51
UniRef50_Q6BJC6 Cluster: Similarity; n=1; Debaryomyces hansenii|... 36 0.67
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 0.88
UniRef50_A7SMP7 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.0
UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2; Desulf... 33 3.6
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 3.6
UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3; ... 33 4.7
UniRef50_Q4J5B9 Cluster: Sucrose-6-phosphate hydrolase precursor... 32 6.2
UniRef50_A4W3Y6 Cluster: Transposase and inactivated derivative;... 32 6.2
UniRef50_A1CUE3 Cluster: Cell division control protein Cdc4, put... 32 6.2
UniRef50_Q9SHY3 Cluster: F1E22.9; n=2; Arabidopsis thaliana|Rep:... 32 8.2
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 155 bits (377), Expect = 4e-37
Identities = 73/82 (89%), Positives = 79/82 (96%)
Frame = -2
Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70 KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129
Query: 81 KTKSVLPPNWKYESSTASALVA 16
KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151
Score = 131 bits (316), Expect = 1e-29
Identities = 61/67 (91%), Positives = 64/67 (95%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5 HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64
Query: 275 FVTGKKI 255
FVTG KI
Sbjct: 65 FVTGNKI 71
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 142 bits (344), Expect = 4e-33
Identities = 68/82 (82%), Positives = 74/82 (90%)
Frame = -2
Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
K LRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYY
Sbjct: 70 KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYY 129
Query: 81 KTKSVLPPNWKYESSTASALVA 16
K LPP WKYES+TAS LVA
Sbjct: 130 KKTKKLPPVWKYESTTASTLVA 151
Score = 97.9 bits (233), Expect = 1e-19
Identities = 46/67 (68%), Positives = 52/67 (77%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H+ GKGIS SALP +RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+ QV+
Sbjct: 5 HSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVK 64
Query: 275 FVTGKKI 255
VTG KI
Sbjct: 65 SVTGSKI 71
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 129 bits (312), Expect = 3e-29
Identities = 59/83 (71%), Positives = 71/83 (85%)
Frame = -2
Query: 264 QKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 85
+K LRI+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RLILVESRIHRLARY
Sbjct: 69 RKILRILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVESRIHRLARY 128
Query: 84 YKTKSVLPPNWKYESSTASALVA 16
YK LPP WKYESSTASA+VA
Sbjct: 129 YKRVKQLPPTWKYESSTASAMVA 151
Score = 78.2 bits (184), Expect = 1e-13
Identities = 36/70 (51%), Positives = 50/70 (71%)
Frame = -3
Query: 464 VGXHAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVA 285
V H G+G + SALP RR+ P WLK+ + +V + + K +KG+ PSQIG+ LRDS G+A
Sbjct: 2 VRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGIA 61
Query: 284 QVRFVTGKKI 255
QV+ VTG+KI
Sbjct: 62 QVKNVTGRKI 71
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 118 bits (284), Expect = 7e-26
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = -2
Query: 234 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 55
GLA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L ESRIH LARY KTK +LPP+
Sbjct: 59 GLALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHPLARYCKTKRMLPPS 118
Query: 54 WKYESSTASALVA 16
WKYES +ASALVA
Sbjct: 119 WKYESPSASALVA 131
Score = 89.0 bits (211), Expect = 5e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVA 285
HAP K +SQS LP SV WLK T+DD+KEQIYKL KKGLTPSQIGV LRD+HG+A
Sbjct: 5 HAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHGLA 61
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 109 bits (261), Expect = 4e-23
Identities = 46/73 (63%), Positives = 63/73 (86%)
Frame = -2
Query: 255 LRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKT 76
++I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RYYK
Sbjct: 69 VKILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRYYKR 128
Query: 75 KSVLPPNWKYESS 37
+P NW+++SS
Sbjct: 129 IQRIPINWRFDSS 141
Score = 62.9 bits (146), Expect = 4e-09
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 443 KGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 264
KGI+ S +P R+ P W+K + + + E I L KKGL PSQIG LRDS G+ V+ + G
Sbjct: 6 KGIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAG 65
Query: 263 KKI 255
+ I
Sbjct: 66 RNI 68
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 6e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = -2
Query: 231 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 52
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 51 K 49
K
Sbjct: 129 K 129
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 90.6 bits (215), Expect = 2e-17
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Frame = -2
Query: 297 TWSCPS-KIRNWQKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLI 121
T+ P K+ +K +IMK GL P +PEDL L+++AV +RKHLE++ KD SK L
Sbjct: 57 TYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQ 116
Query: 120 LVESRIHRLARYYKTKSVLPPNWKYESSTASALV 19
L+ES+I RL +YYK+K VLP +W+Y TA LV
Sbjct: 117 LIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150
Score = 69.3 bits (162), Expect = 4e-11
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
HA +G S S P R+ VP W++ T + V++ + +L KKG +QIG++LRD++G+ V+
Sbjct: 5 HARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVK 64
Query: 275 FVTGKKIS 252
+TGKKIS
Sbjct: 65 LITGKKIS 72
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 89.0 bits (211), Expect = 5e-17
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = -2
Query: 252 RIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTK 73
RI++ GLAP++PEDL +LIK+AV +RKHLE++ KD S L L+ES+I RL +YYK K
Sbjct: 80 RILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRK 139
Query: 72 SVLPPNWKYESSTASALV 19
LP +W+Y+ A LV
Sbjct: 140 GKLPKDWRYDPEQAKLLV 157
Score = 53.2 bits (122), Expect = 3e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
HA +G S S P R + P WL+ T +D++ + KL K+G + + IG +LRD +G+ V+
Sbjct: 5 HARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVK 64
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 87.0 bits (206), Expect = 2e-16
Identities = 40/52 (76%), Positives = 45/52 (86%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 300
H PGKG+S+SAL SVPTWLKLT+D+VKEQIYKL KKGLTP QIGV+LRD
Sbjct: 218 HVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 79.0 bits (186), Expect = 5e-14
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = -2
Query: 246 MKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSV 67
++ GL PD+P DL YL+K+A + KH+E N +D +K L+ S+IHRLA+YYK K V
Sbjct: 77 LEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGV 136
Query: 66 LPPNWKYESSTA 31
LP +WKY A
Sbjct: 137 LPKDWKYSIEIA 148
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H G S S P R + P W + V+ +I +L K+G +P+ IG++LRD +G+ VR
Sbjct: 7 HKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVR 66
Query: 275 FVTGKKI 255
GK +
Sbjct: 67 LYIGKSL 73
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 76.2 bits (179), Expect = 4e-13
Identities = 35/72 (48%), Positives = 50/72 (69%)
Frame = -2
Query: 252 RIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTK 73
+I++ GL P +PEDL+YLIKKA ++ HL + D +++ L L+ES I+RL+RYYK
Sbjct: 74 KILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIESHIYRLSRYYKRI 133
Query: 72 SVLPPNWKYESS 37
LP NWKY S+
Sbjct: 134 FRLPKNWKYISN 145
Score = 47.2 bits (107), Expect = 2e-04
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKG-LTPSQIGVMLRDSHGVAQV 279
++ GKGIS + +P R+ W LT+ ++ + I L K L PS+IG++LRD V
Sbjct: 5 YSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKLVVDT 64
Query: 278 RFVTGKKIS 252
R ++G IS
Sbjct: 65 RNISGMNIS 73
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 76.2 bits (179), Expect = 4e-13
Identities = 37/73 (50%), Positives = 51/73 (69%)
Frame = -2
Query: 264 QKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 85
+K +I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E++I RL+ Y
Sbjct: 69 KKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSY 128
Query: 84 YKTKSVLPPNWKY 46
YK K VLP +WKY
Sbjct: 129 YKEKGVLPADWKY 141
Score = 58.0 bits (134), Expect = 1e-07
Identities = 27/67 (40%), Positives = 44/67 (65%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
HA +G S S R S P W+ ++ ++V++++ +L +G PS IG++LRD +G+ V+
Sbjct: 5 HARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVK 64
Query: 275 FVTGKKI 255
VTGKKI
Sbjct: 65 QVTGKKI 71
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 75.4 bits (177), Expect = 7e-13
Identities = 33/68 (48%), Positives = 46/68 (67%)
Frame = -2
Query: 252 RIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTK 73
R ++ G+ P +P DL L+ +A +R HL RKD +K+RLILV SR++R+ARYYK K
Sbjct: 73 RFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRK 132
Query: 72 SVLPPNWK 49
+P NWK
Sbjct: 133 MRIPGNWK 140
Score = 59.3 bits (137), Expect = 5e-08
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H+ GKG S S P + PTWL + D++K + ++G KG+ IG LRD +G+ +
Sbjct: 5 HSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKAS 64
Query: 275 FVTGKKIS 252
V G+ I+
Sbjct: 65 DVLGESIT 72
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 71.7 bits (168), Expect = 8e-12
Identities = 31/74 (41%), Positives = 50/74 (67%)
Frame = -2
Query: 252 RIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTK 73
+IM+ G P+LPEDL +++KAV +++HL N+ D+ + L L+E+++HRL YYK
Sbjct: 72 QIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRI 131
Query: 72 SVLPPNWKYESSTA 31
+P +WKY+S A
Sbjct: 132 GRIPKDWKYKSVVA 145
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H+ G S S P+ P+W++ +V++ I K K+GL PSQIG LRD H + R
Sbjct: 5 HSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTR 63
Query: 275 FVTGKKIS 252
+TGK ++
Sbjct: 64 PITGKSVT 71
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 68.1 bits (159), Expect = 1e-10
Identities = 29/73 (39%), Positives = 49/73 (67%)
Frame = -2
Query: 249 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 70
I++ L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E+++HRL+ YYK
Sbjct: 74 ILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIG 133
Query: 69 VLPPNWKYESSTA 31
+P WKY+S A
Sbjct: 134 RIPATWKYKSVVA 146
Score = 55.6 bits (128), Expect = 6e-07
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H G S S P P+W+ + +++E + K K GLTPSQIG+ LRD H + ++
Sbjct: 5 HTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIK 64
Query: 275 FVTGKKI 255
+T K I
Sbjct: 65 PITKKTI 71
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 58.4 bits (135), Expect = 8e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = -2
Query: 252 RIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTK 73
+++K L D+PEDL LI++ KHL N+ D ++K + L+ S++ RL RYYK
Sbjct: 73 QVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRT 132
Query: 72 SVLPPNWKYE 43
S LP +W E
Sbjct: 133 SRLPQDWSLE 142
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H +G S S R P+W++ + D++KE I K+ K+G+T S IG+ LRD + + R
Sbjct: 5 HTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTR 64
Query: 275 FVTGKKI 255
V K+
Sbjct: 65 PVLHMKL 71
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 55.6 bits (128), Expect = 6e-07
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = -2
Query: 216 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 37
PEDL L+++AVA+ +HL N +D +K L L E++I RL YYK + L +W+Y+
Sbjct: 85 PEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLGNYYKAEGRLDSDWRYKRD 144
Query: 36 TASALV 19
+V
Sbjct: 145 QLRLIV 150
Score = 51.6 bits (118), Expect = 1e-05
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
+A +G S S+ P P W A +++ I + K G++ +QIG +LRD H V VR
Sbjct: 5 YASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAVPNVR 64
Query: 275 FVTGKKI 255
V GK+I
Sbjct: 65 LVLGKRI 71
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 53.6 bits (123), Expect = 2e-06
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVK 366
HAPGKG+SQSALP RRSV WLKL +DDVK
Sbjct: 448 HAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 50.0 bits (114), Expect = 3e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = -2
Query: 264 QKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 85
+K I++ PDLPEDL L+++AV +R H++ N D +K L +S+I RL Y
Sbjct: 73 KKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDY 132
Query: 84 YKTKSVLPPNWKYESSTA 31
Y+ V N+ Y A
Sbjct: 133 YRGDEV-DENFTYSYDNA 149
Score = 42.7 bits (96), Expect = 0.004
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS--HG--V 288
H +G S S P P W + D ++ ++ +L ++G +PS+IG+ LRD G +
Sbjct: 5 HTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPI 64
Query: 287 AQVRFVTGKKIS 252
V TGKK++
Sbjct: 65 PDVSLATGKKVT 76
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 35.9 bits (79), Expect = 0.51
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -3
Query: 416 NRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
N +VPTW+K T D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 54 NIYAVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_Q6BJC6 Cluster: Similarity; n=1; Debaryomyces
hansenii|Rep: Similarity - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 401
Score = 35.5 bits (78), Expect = 0.67
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 390 EIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMK 241
EI C C N W++G CNA G +S +K N ++ RIMK
Sbjct: 338 EIRCNHCGSKNTPEWRKGLDGNRTLCNACGLFYSKLTKKYNAEEAARIMK 387
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 0.88
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 198 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 46
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_A7SMP7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 610
Score = 33.9 bits (74), Expect = 2.0
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 336 SHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPD-LPEDLYYLIKKAVAMRKHLE 160
SHS+ C T SCP+ + N +R++K +P P L++L K + L
Sbjct: 257 SHSMLRPCFGSEMTVSCPALVTNVASSVRLVKWRSYSPSGTPRLLFHLQKGPGIQKWFLR 316
Query: 159 RNRKDKDSKFRL 124
+ ++S+ RL
Sbjct: 317 AHNGSQNSRVRL 328
>UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep:
ComEC/Rec2-related protein - Desulfovibrio vulgaris
subsp. vulgaris (strain DP4)
Length = 979
Score = 33.1 bits (72), Expect = 3.6
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 288
+A G G++ +ALP S P W+ A V + + GL ++ +MLRD H V
Sbjct: 60 YAAGWGVALAALPETPSAPAWVTGKAQRVTGIVDDV--DGLPDGRLRIMLRDVHPV 113
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 198 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 49
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3;
Brucella|Rep: Putative uncharacterized protein -
Brucella suis
Length = 276
Score = 32.7 bits (71), Expect = 4.7
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -3
Query: 404 VPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQV 279
+PTWL L ++ Y+L K +TP+ IG+ + + G++++
Sbjct: 149 LPTWLGLRRGKLRPLYYRLIHKEVTPASIGITVFGNDGISRL 190
>UniRef50_Q4J5B9 Cluster: Sucrose-6-phosphate hydrolase precursor;
n=7; Gammaproteobacteria|Rep: Sucrose-6-phosphate
hydrolase precursor - Azotobacter vinelandii AvOP
Length = 961
Score = 32.3 bits (70), Expect = 6.2
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -2
Query: 369 KGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPDLPEDLYYLIK 190
+ +L+ W +L A+G+ W CP +D+ + GL PD + + L +
Sbjct: 661 RSRDLRQWDCLGRALEGRREADGYMWECPDLFELEGRDVFLFSPQGLEPD-GHERWNLFQ 719
Query: 189 KAVAMRKHLERNRKDKDSKFRLI 121
+ + ER R +S+ R I
Sbjct: 720 NGYRLGRLDERARFVAESELREI 742
>UniRef50_A4W3Y6 Cluster: Transposase and inactivated derivative;
n=41; Streptococcus|Rep: Transposase and inactivated
derivative - Streptococcus suis (strain 98HAH33)
Length = 449
Score = 32.3 bits (70), Expect = 6.2
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = -2
Query: 336 SHSLTNWCNAEGFTWSC--PSKIRNWQKDLRIMKAMGL-APDLPEDLYYLIKKAVAMRKH 166
S L + N G+ ++ P K + LR+ K + A L + + L +K ++K
Sbjct: 110 SRRLQTFLNNNGYAYTRFNPLKPKKQLDSLRVRKTNQIDAEKLAQSQFVLNRKPTYVQKK 169
Query: 165 LERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTAS 28
+N +D S+F L E + R +K V P W+ ST S
Sbjct: 170 FYQNLRDL-SRFYQNLTEDIVRAKNRLHKVLQVTFPEWENILSTPS 214
>UniRef50_A1CUE3 Cluster: Cell division control protein Cdc4,
putative; n=5; Eurotiomycetidae|Rep: Cell division
control protein Cdc4, putative - Aspergillus clavatus
Length = 1006
Score = 32.3 bits (70), Expect = 6.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 306 EGFTWSCPSKIRNWQKDLRIMKAMGLAPDLPEDL 205
EG+ W P +W++DL + AM PD +D+
Sbjct: 471 EGWGWQFPHGEEDWERDLSLSAAMKADPDCADDI 504
>UniRef50_Q9SHY3 Cluster: F1E22.9; n=2; Arabidopsis thaliana|Rep:
F1E22.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 180
Score = 31.9 bits (69), Expect = 8.2
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +1
Query: 259 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRRLGSADWEI 438
FL +T +T A PC++ I+ + P P+L FTS+ F V T+RRL
Sbjct: 16 FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRRLN------ 66
Query: 439 PLPGACXPTHVCGFLLNRR 495
P HV F +NRR
Sbjct: 67 -------PHHVVPFFVNRR 78
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,078,887
Number of Sequences: 1657284
Number of extensions: 8875726
Number of successful extensions: 24133
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24131
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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