Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   2.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   2.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   3.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   3.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   4.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.1  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.1  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 99  RLARYYKTKSVLPPNWK 49
           RL  Y  T+SVL  +WK
Sbjct: 159 RLRMYINTESVLDGDWK 175


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 169 LSHCNSFLD 195
           LSHCNS++D
Sbjct: 246 LSHCNSYVD 254


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 DLFASYESYLGNSM*IPQHYTN 320
           D + +Y S + N+  +P HY+N
Sbjct: 20  DNYYNYTSDIPNAQQMPPHYSN 41


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 DLFASYESYLGNSM*IPQHYTN 320
           D + +Y S + N+  +P HY+N
Sbjct: 20  DNYYNYTSDIPNAQQMPPHYSN 41


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 DLFASYESYLGNSM*IPQHYTN 320
           D + +Y S + N+  +P HY+N
Sbjct: 20  DNYYNYTSDIPNAQQMPPHYSN 41


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 422 APTGRYPYQERAYRPMF 472
           A T   PYQ++ Y+P++
Sbjct: 445 AVTAVQPYQDQEYQPIY 461


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 IAFMIRRSFCQLRILLGQLHVNPSALH 316
           +AF+++    +L++ +  L +NP   H
Sbjct: 599 VAFLLKHIVPKLQLCMQNLVINPHQQH 625


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 397 VGTLRRLGSADWEIPLPGACXPTHVC 474
           V  ++RL + DW      AC    VC
Sbjct: 131 VPLVQRLSAGDWFTSRTSACGLFSVC 156


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 414 PPQCPYLVEIDCR 376
           PP+CP + E  C+
Sbjct: 30  PPRCPPIYEPSCQ 42


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 306 QHYTNL*GSETLLS 347
           QHYTN+   E ++S
Sbjct: 502 QHYTNIISQEQIIS 515


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,472
Number of Sequences: 336
Number of extensions: 2198
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)