Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0262.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 143 2e-35
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.51
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 0.90
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 2.7
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 2.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 2.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 4.8
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces... 25 6.3
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 25 8.4
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 143 bits (346), Expect = 2e-35
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = -2
Query: 264 QKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 85
QK +RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARY
Sbjct: 69 QKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARY 128
Query: 84 YKTKSVLPPNWKYESSTASALVA 16
Y+ LPP WKYES+TASALVA
Sbjct: 129 YRKVGALPPTWKYESATASALVA 151
Score = 95.9 bits (228), Expect = 3e-21
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H+ GKGI+ SALP RS P W K AD V EQI K KKG++PSQIGV LRDSHG+ QVR
Sbjct: 5 HSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVR 64
Query: 275 FVTGKKI 255
F+TG+KI
Sbjct: 65 FITGQKI 71
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 0.51
Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Frame = -2
Query: 435 LPVGAA*PPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 256
+P G PP P ++ R+ Q W+ S++NW N +G+T ++ +
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYTIPLDKRLAADGRG 278
Query: 255 LRIMKAMGLAPDLPEDLYYLIK--------KAVAMRKHLERNRKDKDSKFRLILVESRIH 100
L ++ E LY + + +A+ +K E+ +++K+ + ++ ++R
Sbjct: 279 LNDVEINDGFAKFSEALYTVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKARED 338
Query: 99 RLARYYKTKSVLPPNWKYESSTASA 25
R+ R S P + K S++ S+
Sbjct: 339 RMGR--NAASSGPSHAKPRSTSVSS 361
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 171 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 70
K+ R +K+ D ++ +LVESR+H L R+ +K+
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 204 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 52
YYL KKA + + N +K+SK I +E + + + L +W
Sbjct: 202 YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSW 252
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 258 DLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKD 139
+L ++KAM PD P D Y IK+ A++ LE ++ +
Sbjct: 508 ELEVVKAMNSQPDDP-DSDYAIKQNNALQNRLEALTRENE 546
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 267 WQKD-LRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 133
W+++ LR+ K +G+ D K+ A ++ R+RK+KDSK
Sbjct: 1274 WEEESLRVQKELGILKT-ERDTSTNRKQGQASKQPQRRHRKEKDSK 1318
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 403 TLRRLGSADWEIP 441
++ RLG+ADWE+P
Sbjct: 654 SMGRLGNADWEVP 666
>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 494 RRFSKKPQTWVGXHAPGKGISQ-SALPNRR 408
+ F KKP W+G G ++ S LPN++
Sbjct: 97 KEFYKKPNKWIGMICAGTLTAKTSGLPNKQ 126
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 381 CRRCK--GTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDL 253
CR C GT + G + CNA G ++ ++ W+K L
Sbjct: 372 CRWCNVLGTGTFCVRRGPEGNKSLCNACGVAYAKTGQLPYWRKSL 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,452
Number of Sequences: 5004
Number of extensions: 37614
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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