Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0262.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 127 6e-30
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 127 6e-30
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 113 7e-26
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 109 9e-25
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420... 30 0.90
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 28 3.6
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 28 4.8
11_06_0647 + 25870470-25870744,25870765-25871533 27 8.4
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979... 27 8.4
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 127 bits (306), Expect = 6e-30
Identities = 59/71 (83%), Positives = 64/71 (90%)
Frame = -2
Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
K LRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYY
Sbjct: 109 KILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYY 168
Query: 81 KTKSVLPPNWK 49
K LPP WK
Sbjct: 169 KRTKKLPPTWK 179
Score = 66.1 bits (154), Expect = 1e-11
Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = -3
Query: 443 KGISQSALPNRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 315
KGIS SALP +R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 314 VMLRDSHGVAQVRFVTGKKI 255
V+LRD HG+ V+ VTG KI
Sbjct: 91 VVLRDQHGIPLVKSVTGSKI 110
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 127 bits (306), Expect = 6e-30
Identities = 59/71 (83%), Positives = 64/71 (90%)
Frame = -2
Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
K LRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYY
Sbjct: 70 KILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYY 129
Query: 81 KTKSVLPPNWK 49
K LPP WK
Sbjct: 130 KRTKKLPPTWK 140
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H+ GKGIS SA+P +R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+ V+
Sbjct: 5 HSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVK 64
Query: 275 FVTGKKI 255
VTG KI
Sbjct: 65 SVTGSKI 71
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 113 bits (272), Expect = 7e-26
Identities = 51/71 (71%), Positives = 62/71 (87%)
Frame = -2
Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
K LR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+HRL RYY
Sbjct: 70 KILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYY 129
Query: 81 KTKSVLPPNWK 49
+ +P +K
Sbjct: 130 RLAKKIPAFFK 140
Score = 77.4 bits (182), Expect = 6e-15
Identities = 35/67 (52%), Positives = 47/67 (70%)
Frame = -3
Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
H+ GKG+S S LP RR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V +
Sbjct: 5 HSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVPLAQ 64
Query: 275 FVTGKKI 255
VTG KI
Sbjct: 65 GVTGGKI 71
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 109 bits (263), Expect = 9e-25
Identities = 53/68 (77%), Positives = 57/68 (83%)
Frame = -2
Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
K L I+KA GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYY
Sbjct: 127 KILHILKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYY 186
Query: 81 KTKSVLPP 58
K LPP
Sbjct: 187 KRTKKLPP 194
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3
Query: 374 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 255
+V+E I K K G SQIGV+LR HG+ V+ + KI
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKI 128
>04_04_1375 +
33040329-33040854,33041611-33041838,33041984-33042081,
33042406-33042450,33042678-33042846,33042917-33043026,
33043983-33044051,33044085-33044158,33044738-33044804,
33044876-33044988,33045148-33045237,33046030-33046144,
33046230-33046388
Length = 620
Score = 30.3 bits (65), Expect = 0.90
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 482 KKPQTWVGXHAPGKGISQSAL-PNRRSVPTWLK 387
KKP TW+ HA G IS+ + +R WLK
Sbjct: 500 KKPLTWLSVHANGSNISKGCVDKDRIKKSAWLK 532
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 273 RNWQKDLRIMK--AMGLAPDLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 124
R+W + R++ + DLPE L++ AVA R LE++R D+ FR+
Sbjct: 5 RSWMEHHRVLSDDSSFHMEDLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 416 NRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 300
+RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 325 SRRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -2
Query: 285 PSKIRNWQKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 112
P + ++ ++ I+ A+ +P YY++ + R L +RK+K+ K L++ E
Sbjct: 20 PQGMEPFKAEIAILSAIRYKHIVPLYSYYVLVEEKQKRHLLRPSRKEKEEKEHLLVFE 77
>02_05_0339 -
28094581-28094817,28095011-28096381,28097713-28097922,
28098047-28098283,28098677-28099041,28099661-28099970
Length = 909
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -3
Query: 395 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKISVS*RQW 234
W LT + +YK + G+ + L+++ ++RFV KK+ R++
Sbjct: 286 WEHLTNQQAVDIVYKNPRAGIAKRLVNTALKEAARKREMRFVDLKKVEKGVRRF 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,425
Number of Sequences: 37544
Number of extensions: 248628
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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