Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        131   3e-31
SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               30   1.2  
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   4.9  
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 27   8.6  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   8.6  
SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35)                   27   8.6  
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)                    27   8.6  
SB_39110| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  131 bits (317), Expect = 3e-31
 Identities = 61/71 (85%), Positives = 66/71 (92%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+KA GLAP LPEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+
Sbjct: 65  KILRILKAKGLAPSLPEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYF 124

Query: 81  KTKSVLPPNWK 49
           KTK VLPPNWK
Sbjct: 125 KTKRVLPPNWK 135



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 38/47 (80%), Positives = 44/47 (93%)
 Frame = -3

Query: 395 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 255
           W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KI
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKI 66


>SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 336 SHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPD-LPEDLYYLIKKAVAMRKHLE 160
           SHS+   C     T SCP+ + N    +R++K    +P   P  L++L K     +  L 
Sbjct: 275 SHSMLRPCFGSEMTVSCPALVTNVASSVRLVKWRSYSPSGTPRLLFHLQKGPGIQKWFLR 334

Query: 159 RNRKDKDSKFRL 124
            +   ++S+ RL
Sbjct: 335 AHNGSQNSRVRL 346


>SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 443 KGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD-SHGVAQVRFVT 267
           +G S S    R S+PTWL+L    +  +  +         Q  V L+D +H  A +++  
Sbjct: 54  RGSSTSNAAPRTSLPTWLQLPGPVLLRRFVRANNNDPLVDQ--VELKDANHTYAHIQYAD 111

Query: 266 GKKISVS*R 240
           G++ +VS R
Sbjct: 112 GRESTVSLR 120


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = -2

Query: 276 IRNWQKDLRIM-KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVES 109
           I+ ++K +R   +A G+APD P +L  LIK+ + + +     +  R+ K+   +    + 
Sbjct: 112 IKKYKKQMRAEERASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDV 171

Query: 108 RIHRLARYYKTK 73
           R+  + R  +TK
Sbjct: 172 RLTAMERLSQTK 183


>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 303 GFTWSCPSKIRNWQKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 133
           GF    P ++   Q+D       GLA   P  L+Y  +    +RK L R  KD+  K
Sbjct: 2   GFLCFPPRRVATPQEDRICSNPQGLAIRPPSVLWYTERSKDEVRKRLLRVAKDRPRK 58


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 353 KLGKKGLTPSQIGVMLRD 300
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLK 387
           H PG   ++ A P  + VP WLK
Sbjct: 236 HKPGSFNAEEARPGMKDVPMWLK 258


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 225 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 82
           PD+P+D YYL +  +++M   L     KD   K   +L++     L  Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195


>SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
          Length = 895

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -2

Query: 324 TNWCNAEGFTWSCPSKIRNWQKDLR---IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERN 154
           T W +     W+    +   Q+D++   + +AMG+    P  L+      V   K  +  
Sbjct: 197 TTWMHPRSKQWNLIDFVIVRQRDIQDVHVTRAMGMRRSPPSTLHSETSHCVTSPKAYKAY 256

Query: 153 RKDKDSKFRLILVES 109
            K+K ++FR ++ E+
Sbjct: 257 PKEKWNQFRDVVTET 271


>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
          Length = 754

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 354 QTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPDLPEDLYYLIKK---A 184
           Q WK     ++NW NA G+T     ++    + L+          L E LY   +K   A
Sbjct: 466 QDWKIPP-CISNWKNARGYTIPLDKRLAADGRGLQDPHINDKFAKLAEALYIADRKAREA 524

Query: 183 VAMRKHLERNRKDKDSK 133
           V MR  LE+    K+ +
Sbjct: 525 VEMRAQLEKKVAQKEKE 541


>SB_39110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 232 THCLHDTEIFLPVTNLTWATP 294
           T CL D  +F  V N TWA P
Sbjct: 83  TPCLCDAAVFSFVVNFTWAMP 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,716
Number of Sequences: 59808
Number of extensions: 294295
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)