Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles ...   153   3e-39
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   3.3  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   5.8  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   7.6  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   7.6  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    23   7.6  

>U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S13 mRNA, complete
           cds. ).
          Length = 151

 Score =  153 bits (371), Expect = 3e-39
 Identities = 72/85 (84%), Positives = 79/85 (92%)
 Frame = -2

Query: 270 NWQKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 91
           N  K LRIMKA+GL PD+PEDLY+LIKKAV++RKHLERNRKD DSKFRLIL+ESRIHRLA
Sbjct: 67  NGNKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIESRIHRLA 126

Query: 90  RYYKTKSVLPPNWKYESSTASALVA 16
           RYYK K+VLPPNWKYESSTASALVA
Sbjct: 127 RYYKIKAVLPPNWKYESSTASALVA 151



 Score =  122 bits (293), Expect = 9e-30
 Identities = 55/67 (82%), Positives = 63/67 (94%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKGIS+SALP RRSVP+WLKL+A+DVKEQI KLGKKG+TPSQIG++LRDSHGVAQVR
Sbjct: 5   HAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FV G K+
Sbjct: 65  FVNGNKV 71


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 13/73 (17%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -3

Query: 461 GXHAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH-GVA 285
           G +  GK     ++     +   + + A  +++ +YK G+ G+T + + ++  +S+    
Sbjct: 32  GLNGTGKSNILDSICFVLGISNLVHVRATSLQDLVYKSGQAGITKATVTLIFDNSNPNQC 91

Query: 284 QVRFVTGKKISVS 246
            + + T ++IS++
Sbjct: 92  PIGYETCREISIT 104


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -2

Query: 414 PPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRN 268
           PP  P  ++ID   C   +L+ ++    ++T     +   WS  S   N
Sbjct: 590 PPDVPNRIDIDVTGCSAVSLRLYEPLEGAITTKFKVQ---WSSRSDFSN 635


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 428  TGRYPYQERAYRPMFAAFY 484
            TG Y Y+ R Y P    FY
Sbjct: 2679 TGLYNYRARLYDPDIGRFY 2697


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 428  TGRYPYQERAYRPMFAAFY 484
            TG Y Y+ R Y P    FY
Sbjct: 2689 TGLYNYRARLYDPDIGRFY 2707


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 392 LKLTADDVKEQIYKL 348
           LKL ADDVK Q+  L
Sbjct: 95  LKLAADDVKGQVESL 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,723
Number of Sequences: 2352
Number of extensions: 9135
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)