Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79239-1|CAA55821.1|  151|Homo sapiens ribosomal protein S13 pro...   155   6e-38
L01124-1|AAA60283.1|  151|Homo sapiens ribosomal protein S13 pro...   155   6e-38
D88010-1|BAA13528.1|  151|Homo sapiens ribosomal protein S13 pro...   155   6e-38
BC100032-1|AAI00033.1|  151|Homo sapiens ribosomal protein S13 p...   155   6e-38
BC066322-1|AAH66322.1|  151|Homo sapiens ribosomal protein S13 p...   155   6e-38
BC029732-1|AAH29732.1|  151|Homo sapiens ribosomal protein S13 p...   155   6e-38
BC006772-1|AAH06772.1|  151|Homo sapiens ribosomal protein S13 p...   155   6e-38
BC000475-1|AAH00475.1|  151|Homo sapiens ribosomal protein S13 p...   155   6e-38
L05090-1|AAC15854.1|  116|Homo sapiens ribosomal protein S13 pro...   116   6e-26
BC065286-1|AAH65286.1|  319|Homo sapiens SNW1 protein protein.         34   0.32 
CR457433-1|CAG33714.1|  536|Homo sapiens SNW1 protein.                 31   1.7  
AM080071-1|CAL04217.1|  101|Homo sapiens immunoglobulin heavy ch...    31   2.9  
U51432-1|AAC15912.1|  536|Homo sapiens nuclear protein Skip prot...    30   3.9  
BT020061-1|AAV38864.1|  536|Homo sapiens SKI-interacting protein...    30   3.9  
BT020060-1|AAV38863.1|  536|Homo sapiens SKI-interacting protein...    30   3.9  
BC108903-1|AAI08904.1|  536|Homo sapiens SNW domain containing 1...    30   3.9  
BC046105-1|AAH46105.2|  531|Homo sapiens SNW1 protein protein.         30   3.9  
BC040112-1|AAH40112.1|  531|Homo sapiens SNW1 protein protein.         30   3.9  
AF045184-1|AAC31697.1|  536|Homo sapiens nuclear receptor coacti...    30   3.9  
AC008372-1|AAF23325.1|  536|Homo sapiens nuclear receptor coacti...    30   3.9  

>X79239-1|CAA55821.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>L01124-1|AAA60283.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>D88010-1|BAA13528.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>BC100032-1|AAI00033.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>BC066322-1|AAH66322.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>BC029732-1|AAH29732.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>BC006772-1|AAH06772.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>BC000475-1|AAH00475.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  155 bits (377), Expect = 6e-38
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYY
Sbjct: 70  KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK VLPPNWKYESSTASALVA
Sbjct: 130 KTKRVLPPNWKYESSTASALVA 151



 Score =  131 bits (316), Expect = 2e-30
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           HAPGKG+SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVR
Sbjct: 5   HAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR 64

Query: 275 FVTGKKI 255
           FVTG KI
Sbjct: 65  FVTGNKI 71


>L05090-1|AAC15854.1|  116|Homo sapiens ribosomal protein S13
           protein.
          Length = 116

 Score =  116 bits (278), Expect = 6e-26
 Identities = 55/60 (91%), Positives = 57/60 (95%)
 Frame = -3

Query: 434 SQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 255
           SQSALP RRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KI
Sbjct: 1   SQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKI 60



 Score =  103 bits (248), Expect = 3e-22
 Identities = 49/58 (84%), Positives = 55/58 (94%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 88
           K LRI+K+ GLA DLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLAR
Sbjct: 59  KILRILKSKGLASDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLAR 116


>BC065286-1|AAH65286.1|  319|Homo sapiens SNW1 protein protein.
          Length = 319

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
            G    L E LY   +K   AV MR  +ER    K  K
Sbjct: 281 NGNFAKLAEALYIADRKAREAVEMRAQVERKMAQKKKK 318


>CR457433-1|CAG33714.1|  536|Homo sapiens SNW1 protein.
          Length = 536

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  +V    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVVHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


>AM080071-1|CAL04217.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 488 FSKKPQTWVGXHAPGKGIS-QSALPNR 411
           FSK P +WV   APGKG+   S +P+R
Sbjct: 32  FSKYPMSWVRQAAPGKGLEWVSGVPDR 58


>U51432-1|AAC15912.1|  536|Homo sapiens nuclear protein Skip
           protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


>BT020061-1|AAV38864.1|  536|Homo sapiens SKI-interacting protein
           protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


>BT020060-1|AAV38863.1|  536|Homo sapiens SKI-interacting protein
           protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


>BC108903-1|AAI08904.1|  536|Homo sapiens SNW domain containing 1
           protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


>BC046105-1|AAH46105.2|  531|Homo sapiens SNW1 protein protein.
          Length = 531

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 217 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 275

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 276 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 313


>BC040112-1|AAH40112.1|  531|Homo sapiens SNW1 protein protein.
          Length = 531

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 217 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 275

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 276 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 313


>AF045184-1|AAC31697.1|  536|Homo sapiens nuclear receptor
           coactivator NCoA-62 protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


>AC008372-1|AAF23325.1|  536|Homo sapiens nuclear receptor
           coactivator NCoA-62 protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414 PPQCPY-LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKA 238
           PP  P  ++    R+      Q WK     ++NW NA+G+T     ++    + L+ +  
Sbjct: 222 PPSPPAPVMHSPSRKMTVKEQQEWKIPP-CISNWKNAKGYTIPLDKRLAADGRGLQTVHI 280

Query: 237 MGLAPDLPEDLYYLIKK---AVAMRKHLERNRKDKDSK 133
                 L E LY   +K   AV MR  +ER    K+ +
Sbjct: 281 NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKE 318


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,676,665
Number of Sequences: 237096
Number of extensions: 1414150
Number of successful extensions: 2730
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)