Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   136   8e-33
Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    31   0.46 
AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    29   1.4  
AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   5.7  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   7.6  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   7.6  
Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    27   10.0 

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  136 bits (329), Expect = 8e-33
 Identities = 62/82 (75%), Positives = 74/82 (90%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K  RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYY
Sbjct: 70  KIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           KTK  LPP WKYES TA++LV+
Sbjct: 130 KTKRQLPPTWKYESGTAASLVS 151



 Score =  100 bits (239), Expect = 7e-22
 Identities = 44/67 (65%), Positives = 57/67 (85%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           H PGKG+++SA+P RRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV QVR
Sbjct: 5   HNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVR 64

Query: 275 FVTGKKI 255
            + G KI
Sbjct: 65  RLAGNKI 71


>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -2

Query: 402 PYLVEIDCRRCKGTNL-QTWKEGSHSLT--NWCNAEGFTWSCPSKIRNWQKDLRIMKAMG 232
           PYL+++DC    GT L Q  + G H +     CN E  + S  S++ N   +++I K + 
Sbjct: 283 PYLLQLDCETNGGTKLMQLGRYGFHFVNPDGTCNNEKIS-SAKSRMENGTVEVQISKNLP 341

Query: 231 LAPDLPEDLYYLI 193
               L   LY+ I
Sbjct: 342 SWGRLQFKLYWYI 354


>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -2

Query: 327 LTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRK 148
           L +W   EG        IR W   L  +  + L  D+   L  L+K+  ++R  L  +RK
Sbjct: 174 LVDWSIEEGLN----RPIREWIYSLLAVIDLPLVQDVVSALRRLVKECRSLRSELSIDRK 229

Query: 147 DKDSKFRLIL 118
            + ++F L +
Sbjct: 230 SEANEFSLFI 239


>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 348 WKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPDLPEDL 205
           WK+    +     ++GF +S P      ++DL ++KAM    +L + L
Sbjct: 95  WKDEDKKIAYVFMSKGFEFSYPQMFEALEEDLELVKAMKQQEELKDKL 142


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 360 NLQTWKEGSHSLTNWCNAEGFTW 292
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 360 NLQTWKEGSHSLTNWCNAEGFTW 292
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 396 LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 256
           +V   C  C  T L   + G+H L+    A G++  CP  I N + +
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICPLCIGNTEME 137


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 107 GFTDWPVITKLRVCFLLTG 51
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 107 GFTDWPVITKLRVCFLLTG 51
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical
           protein ZK39.3 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 372 CKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAMGLAPDLP 214
           C  TN  TW +GS S T      GF W       +++K   ++      P+ P
Sbjct: 125 CTATNSFTWTDGSTSGT-----AGFVWDSRQPDNDYKKQPCVILLSSKTPETP 172


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 213 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 88
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 213 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 88
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 237 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 91
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 237 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 91
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 213 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 88
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,734,658
Number of Sequences: 27780
Number of extensions: 210322
Number of successful extensions: 493
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)