Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    28   0.062
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 0.062
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = -2

Query: 414 PPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDLRIMKAM 235
           PPQCP   ++D     G    T K    + ++  +A     S P       +D+ ++K +
Sbjct: 565 PPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRV 624

Query: 234 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 136
             AP L  D   L+ +A    K   R  + KDS
Sbjct: 625 LQAPPL-YDTNSLMDEAYKPHKKF-RALRQKDS 655


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 FVNLFLYIVGSQFQPGR 401
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 FVNLFLYIVGSQFQPGR 401
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 FVNLFLYIVGSQFQPGR 401
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 239 AFMIRRSFCQLRILLGQLHVNPSALH 316
           AF+++    +L+I L +  +NP   H
Sbjct: 598 AFLVKNIIPKLQIALSEFVINPHQQH 623


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 207 LYYLIKKAVAMRKHLERNRKD 145
           LYY + K +  R  LER   D
Sbjct: 260 LYYFLHKQLMTRYFLERMSND 280


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 207 LYYLIKKAVAMRKHLERNRKD 145
           LYY + K +  R  LER   D
Sbjct: 260 LYYFLHKQLMTRYFLERMSND 280


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 162 ERNRKDKDSKFRLILVESRIHRLARYYKTKSV 67
           +R RK+ DSK   + ++   H L  ++K   V
Sbjct: 492 QRLRKELDSKTGGVNLKGHAHWLTLHFKDPKV 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,306
Number of Sequences: 438
Number of extensions: 2290
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)