Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0262.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   142   1e-34
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   142   1e-34
At1g65720.1 68414.m07459 expressed protein                             32   0.25 
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    30   1.00 
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   4.0  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   4.0  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   7.0  
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    27   7.0  
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim...    27   7.0  
At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ...    27   7.0  
At5g25980.2 68418.m03091 glycosyl hydrolase family 1 protein con...    27   9.3  
At5g25980.1 68418.m03090 glycosyl hydrolase family 1 protein con...    27   9.3  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  142 bits (344), Expect = 1e-34
 Identities = 68/82 (82%), Positives = 74/82 (90%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYY
Sbjct: 70  KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           K    LPP WKYES+TAS LVA
Sbjct: 130 KKTKKLPPVWKYESTTASTLVA 151



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 46/67 (68%), Positives = 53/67 (79%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           H+ GKGIS SALP +RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+ QV+
Sbjct: 5   HSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVK 64

Query: 275 FVTGKKI 255
            VTG KI
Sbjct: 65  SVTGSKI 71


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  142 bits (344), Expect = 1e-34
 Identities = 68/82 (82%), Positives = 74/82 (90%)
 Frame = -2

Query: 261 KDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 82
           K LRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYY
Sbjct: 70  KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYY 129

Query: 81  KTKSVLPPNWKYESSTASALVA 16
           K    LPP WKYES+TAS LVA
Sbjct: 130 KKTKKLPPVWKYESTTASTLVA 151



 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = -3

Query: 455 HAPGKGISQSALPNRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 276
           H+ GKGIS SALP +RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+ QV+
Sbjct: 5   HSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVK 64

Query: 275 FVTGKKI 255
            VTG KI
Sbjct: 65  SVTGSKI 71


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 27/79 (34%), Positives = 37/79 (46%)
 Frame = +1

Query: 259 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRRLGSADWEI 438
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RRL       
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRRLN------ 66

Query: 439 PLPGACXPTHVCGFLLNRR 495
                  P HV  F +NRR
Sbjct: 67  -------PHHVVPFFVNRR 78


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 21/85 (24%), Positives = 43/85 (50%)
 Frame = -2

Query: 279 KIRNWQKDLRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 100
           ++R++++     K M  +  +P+   Y   +A+   K   +NRKDK +   L ++ S+  
Sbjct: 637 RVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINSKFG 694

Query: 99  RLARYYKTKSVLPPNWKYESSTASA 25
           R+    KTK      WKY+++  ++
Sbjct: 695 RVKA--KTKGKKDEFWKYKTNRTTS 717


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 381 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 265
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 387 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 301
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 366 GTNLQTWKEGSHSLTNWCNAE 304
           GTN ++ KE   SLT+W  AE
Sbjct: 70  GTNNESMKETGQSLTSWVEAE 90


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 267 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 362
           +YESY+G  M + QHY +   S+T L   V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339


>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
           similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
           [Methylovorus sp.]
          Length = 419

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 381 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 280
           C  C G  L   K+GS ++   CN +G    CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264


>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
           identical to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana], missing 200 aa at
           N-terminus
          Length = 772

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = -3

Query: 497 DRRFSKKPQTWVGXHAPGKGISQSALPNRRSVPTWLKL-----TADDVKEQIYKLGKKG- 336
           DR F+       G H  G+ +S +ALP+ +  P    +      A  +  Q+ KLG    
Sbjct: 353 DREFASNLVLGNGKHYKGQSLSSTALPHAKFYPIMASVNAKAKNASALDAQLCKLGSLDP 412

Query: 335 -LTPSQIGVMLRDSHG 291
             T  +I V LR  +G
Sbjct: 413 IKTKGKILVCLRGQNG 428


>At5g25980.2 68418.m03091 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]; similar to myrosinase precursor (EC
           3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from
           [Arabidopsis thaliana]
          Length = 547

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 369 KGTNLQTWKEGSHSLTNWCNAE---GFTWSCPSKIRNWQKDLRIMKAMGL 229
           +G  L  W   +H       A+   G T +C S  R WQKDL +M+ +G+
Sbjct: 74  RGRGLNVWDGFTHRYPEKGGADLGNGDT-TCDS-YRTWQKDLDVMEELGV 121


>At5g25980.1 68418.m03090 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]; similar to myrosinase precursor (EC
           3.2.3.1)(Sinigrinase) (Thioglucosidase) SP|P37702 from
           [Arabidopsis thaliana]
          Length = 471

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 369 KGTNLQTWKEGSHSLTNWCNAE---GFTWSCPSKIRNWQKDLRIMKAMGL 229
           +G  L  W   +H       A+   G T +C S  R WQKDL +M+ +G+
Sbjct: 74  RGRGLNVWDGFTHRYPEKGGADLGNGDT-TCDS-YRTWQKDLDVMEELGV 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,239,907
Number of Sequences: 28952
Number of extensions: 199600
Number of successful extensions: 593
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)