Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0261.Seq
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 94 1e-18
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 81 1e-14
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 81 1e-14
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 76 4e-13
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 69 6e-11
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 66 3e-10
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 63 3e-09
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 59 6e-08
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 59 6e-08
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 56 4e-07
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 56 6e-07
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 56 6e-07
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 55 1e-06
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 52 5e-06
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 52 7e-06
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 46 5e-04
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 44 0.001
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 44 0.001
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 44 0.003
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.010
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 41 0.013
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 40 0.031
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 36 0.51
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 35 0.88
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 35 0.88
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 34 1.5
UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=... 34 1.5
UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1; ... 33 3.6
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 33 4.7
UniRef50_A7UG40 Cluster: Membrane protein; n=1; Fibrobacter succ... 32 6.2
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 94.3 bits (224), Expect = 1e-18
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = +1
Query: 82 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRRD 261
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D++
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 262 SQ*CTRKQRLPESPLK 309
+K + + P K
Sbjct: 64 FTAVLKKGKYAQRPAK 79
Score = 85.0 bits (201), Expect = 8e-16
Identities = 45/79 (56%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +3
Query: 252 QKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRASA 431
+KGFT V KK K ++PAKN +R FKAG RRSL K+K LL R DL +A LRRASA
Sbjct: 61 KKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASA 120
Query: 432 ILRSQR--PIKAKKAXTAR 482
+LRSQ+ P+K KKA A+
Sbjct: 121 VLRSQKPAPVKGKKAEFAK 139
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 81.4 bits (192), Expect = 1e-14
Identities = 39/78 (50%), Positives = 51/78 (65%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRR 258
MS+ L WMI RNNNA+L+KKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D +
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 259 DSQ*CTRKQRLPESPLKT 312
T++ + P K+
Sbjct: 61 GFVVTTKRAKQQNKPGKS 78
Score = 64.5 bits (150), Expect = 1e-09
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +3
Query: 255 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRASAI 434
KGF V K+AK KP K+ I AG RRSLYK++R L R DL + LR+ASAI
Sbjct: 60 KGFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAI 119
Query: 435 LRSQR--PIKAKKAXTARXQ 488
L SQ+ I AKK + +
Sbjct: 120 LESQKRSAIIAKKGRAKKSE 139
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 81.0 bits (191), Expect = 1e-14
Identities = 32/55 (58%), Positives = 46/55 (83%)
Frame = +1
Query: 73 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
+ SS LNW+I+R++NAFL+K+R+I+KPFS EP N+TNL SFRY+GL+H K + +
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTITI 55
Score = 71.3 bits (167), Expect = 1e-11
Identities = 36/72 (50%), Positives = 45/72 (62%)
Frame = +3
Query: 252 QKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRASA 431
+KG VY + K KPAK ++ K G RR+L K+ ++KA R DL A LRRASA
Sbjct: 60 KKGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASA 119
Query: 432 ILRSQRPIKAKK 467
ILRSQRP K +K
Sbjct: 120 ILRSQRPTKTRK 131
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 76.2 bits (179), Expect = 4e-13
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRR 258
MSS L W IIRNN+ FLV+ + K +KEPNNVT L++F+YNGL++KK VGV P +
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 259 DSQ*CTRKQRLPESPLK 309
TRK + P K
Sbjct: 59 GVVITTRKNKAANKPGK 75
Score = 46.8 bits (106), Expect = 3e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 246 P*QKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRA 425
P KG + +K KA KP K + + +RR+L ++ + + R DL +RRA
Sbjct: 55 PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 114
Query: 426 SAILRSQRP 452
AILRSQ+P
Sbjct: 115 CAILRSQKP 123
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 68.9 bits (161), Expect = 6e-11
Identities = 25/52 (48%), Positives = 42/52 (80%)
Frame = +1
Query: 82 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
S L W+++RNN++F+VK++ I + FS+EP N+ LHS++Y+GL++ KAVG+
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGI 54
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 66.5 bits (155), Expect = 3e-10
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGV 51
Score = 62.5 bits (145), Expect = 5e-09
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +3
Query: 255 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRASAI 434
KG VV K+ RKPA + +R AR +L ++ +++ R DL A +RRASAI
Sbjct: 58 KGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 435 LRSQRPIKAKKAXT 476
LRSQ+P+ K+ T
Sbjct: 118 LRSQKPVMVKRKRT 131
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 63.3 bits (147), Expect = 3e-09
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKP---FSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 249
MS+ L W +I+N+++FL++++ + F+ EPNNV N +SF++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 250 DRRDSQ*CTRKQRLPESPLK 309
D + T++ ++ P K
Sbjct: 61 DNKGVLFKTKRSKVVSKPAK 80
Score = 55.2 bits (127), Expect = 8e-07
Identities = 29/71 (40%), Positives = 38/71 (53%)
Frame = +3
Query: 255 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRASAI 434
KG K++K KPAK +R RR+ +K+ L+ R DL + +RRASAI
Sbjct: 63 KGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAELAVRRASAI 122
Query: 435 LRSQRPIKAKK 467
L SQRP K K
Sbjct: 123 LSSQRPAKRLK 133
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 58.8 bits (136), Expect = 6e-08
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Frame = +1
Query: 103 IIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRRD---SQ*C 273
+IRNN+AFL ++R I+K FS+EP N+ ++S YNGL + KAVGV D + S
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 274 TRKQRLP-ESPLKT 312
T K+ LP +S +KT
Sbjct: 62 TGKKNLPAQSVIKT 75
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 58.8 bits (136), Expect = 6e-08
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Frame = +1
Query: 91 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTI 59
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 56.0 bits (129), Expect = 4e-07
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 255
+SS L W I RN NAFLVK+R FS++P N+ N SF+Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 256 RDSQ*CTRKQRLPESPLK 309
T+K P+ P K
Sbjct: 67 GGVVVITKKPGNPQQPAK 84
Score = 37.5 bits (83), Expect = 0.17
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 258 GFTVVYKKAKATRKPAKNLIRRPFKAGAR-RSLYKVKRLLKAXHX-RTDLCKAXLRRASA 431
G V+ KK ++PAKNL+ + A R +YK A + R DL + + R SA
Sbjct: 68 GVVVITKKPGNPQQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLREDAVARVSA 127
Query: 432 ILRSQRPIK 458
I RSQ+P K
Sbjct: 128 IRRSQKPKK 136
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 55.6 bits (128), Expect = 6e-07
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVE 243
MSS L W +I+NN+ FL+K+ + FS++P N+ N + FRY G +HKKA+G+ E
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKE 53
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 55.6 bits (128), Expect = 6e-07
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
+S + WM++RN ++FLVKKRNIKK FS +P N +++ R+ G I K+A+ V
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTV 54
Score = 55.6 bits (128), Expect = 6e-07
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAX-HXRTDLCKAXLRRASA 431
KG T VY K KPAK L R G RR++ ++ +K + R DL + RRASA
Sbjct: 61 KGVTFVYLAHKGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASA 120
Query: 432 ILRSQRPIKAKKAXTAR 482
IL+SQR I KK TAR
Sbjct: 121 ILKSQRAIVPKK-KTAR 136
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
+SS L W + RN NAFLVK+ + FS++P N+ N HSF+Y G + KA+GV
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIGV 61
Score = 37.1 bits (82), Expect = 0.22
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 258 GFTVVYKKAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKAXHXRTDLCKAXLRRASA 431
G V+ KK+ ++P KN +R F KA R+ V R DL + + R SA
Sbjct: 68 GVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVSA 127
Query: 432 ILRSQRPIK 458
I RSQ+P K
Sbjct: 128 IRRSQKPKK 136
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 52.4 bits (120), Expect = 5e-06
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV 53
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 52.0 bits (119), Expect = 7e-06
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 249
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 250 DR 255
R
Sbjct: 61 PR 62
Score = 36.3 bits (80), Expect = 0.38
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 255 KGFTVVYK-KAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKAXHXRTDLCKAXLRRA 425
+G ++ K K +KPAK L R+ A A R YK + + R DL K + RA
Sbjct: 62 RGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARA 120
Query: 426 SAILRSQRPIK 458
SAIL SQRP K
Sbjct: 121 SAILSSQRPKK 131
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVV 240
MS + W +++ NNAFLVK+ + S +P N T + ++ G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
+S+ W ++ NA+LVK++ I S++P + NL + +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGV 100
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 44.4 bits (100), Expect = 0.001
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
MSS L W+++RN N+F VK + FS+E N+ N + +Y+GL + K V +
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI 52
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
MS L W II+ NNAFL + S EP N+ N +S +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGL--TLSAEPGNLRNKNSLKYSGLARRTTIDV 51
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.5 bits (93), Expect = 0.010
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 79 MSSSLNWMIIRNNNAFLVKKR-NIKKPFSKEPNNVTNLHSFR 201
+SS L W + RN NA+LVK+ + FS++P NV N HSF+
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
Score = 37.1 bits (82), Expect = 0.22
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +3
Query: 258 GFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK--VKRLLKAXHXRTDLCKAXLRRAS 428
G + KK +++PAK+L + GA R +YK R K + R DL + + R S
Sbjct: 103 GVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKNGY-RADLRQEAVSRVS 161
Query: 429 AILRSQRPIKAKKAXTARXQXG 494
AI RSQ KAKK AR G
Sbjct: 162 AIRRSQ---KAKKETPARKPRG 180
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 41.1 bits (92), Expect = 0.013
Identities = 25/84 (29%), Positives = 47/84 (55%)
Frame = +1
Query: 82 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRRD 261
S +L W++ +N ++FLVK+ F++E N+ N + +Y+GL KAV + D++
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVD-ISISDKKV 59
Query: 262 SQ*CTRKQRLPESPLKT*SAVHSR 333
+ T+ ++ + P K +AV R
Sbjct: 60 TL-TTKIEKATKKPAKAQNAVPLR 82
Score = 39.5 bits (88), Expect = 0.041
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 255 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXL---RRA 425
K T+ K KAT+KPAK P + GAR ++ + + R DL KA L R
Sbjct: 57 KKVTLTTKIEKATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
Query: 426 SAILRSQRPIKAKKAXTAR 482
S + + ++ + KKA +R
Sbjct: 117 STVAKVEQGVLQKKAIRSR 135
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 39.9 bits (89), Expect = 0.031
Identities = 16/52 (30%), Positives = 33/52 (63%)
Frame = +1
Query: 82 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
S+ L W ++ N +F+ K+N F+ EP N+ NL++ +Y+GL ++++ +
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISM 52
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 35.9 bits (79), Expect = 0.51
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 82 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 255
S+ L W+++R N+ FL K+ I+ S +P N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFNNNANWTKRHAGFLNTKAAVVKTKGDR 59
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 35.1 bits (77), Expect = 0.88
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 73 VKMSSSLNWMIIRNNNAFL-VKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVEN 246
V S W + + +NAF FS EP NVT SFR +GL + K + + E+
Sbjct: 5 VPASDDFLWQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREH 63
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 35.1 bits (77), Expect = 0.88
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 76 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN-VTN-LHSFRYNGLIHKKAVGVVENP 249
K S LNW + N + K+NIK K+ NN +TN L F +N I+K+ + ++E
Sbjct: 36 KKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLEIN 95
Query: 250 DRRDSQ*CTRKQRLPESPLK 309
++ + T+ +++ +K
Sbjct: 96 KIKEKKKETKNKQIKRKEIK 115
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 85 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVT 183
S L W I++NNNAFLVK + F+ +P +VT
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVT 32
>UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=2;
Theileria|Rep: 60S ribosomal protein l28, putative -
Theileria annulata
Length = 150
Score = 34.3 bits (75), Expect = 1.5
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 91 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGL 213
L W ++RNN+AFL K R FS E +N+ + HS R+ L
Sbjct: 20 LLWELVRNNHAFLKKSRT--TTFSLESHNLLSKHSPRFTVL 58
>UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 146
Score = 33.1 bits (72), Expect = 3.6
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 91 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 249
L W +I+ NNA++ K + + F+KE N+ H+ Y+GL+ + + +P
Sbjct: 27 LVWELIKKNNAYIFKSGH--ETFTKERYNLMARHTPMYSGLMQNSVMNLELSP 77
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.7 bits (71), Expect = 4.7
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 91 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 255
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_A7UG40 Cluster: Membrane protein; n=1; Fibrobacter
succinogenes subsp. succinogenes S85|Rep: Membrane
protein - Fibrobacter succinogenes subsp. succinogenes
S85
Length = 284
Score = 32.3 bits (70), Expect = 6.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 21 LRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQ 161
+ TH E FG + R+ ++ +++H QQ C E Q+ KA Q
Sbjct: 100 INTHHEKTCFGNQTDNCREGNLLEVVEEHKQQYCASLERDQFSKAKQ 146
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,122,481
Number of Sequences: 1657284
Number of extensions: 8962193
Number of successful extensions: 21571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21548
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -