Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0261.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     58   3e-09
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     56   2e-08
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     56   2e-08
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990...    31   0.68 
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    30   0.90 
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   2.1  
09_02_0336 - 7397745-7398308,7398813-7400723                           29   2.7  
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    29   2.7  
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491...    28   3.6  
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106...    27   6.3  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = +1

Query: 88  SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
           SL W +++ NN+FLVK+    N K  FSKEPNN+ N+HS++++GL +KK V V
Sbjct: 7   SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTV 59


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = +1

Query: 91  LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = +1

Query: 91  LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59


>09_06_0106 -
           20898480-20898680,20898762-20898864,20898953-20899047,
           20899113-20899135,20899725-20899799,20900219-20900267,
           20900349-20900414,20901257-20901306,20901688-20901812,
           20903488-20903600
          Length = 299

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 115 NNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVG---VVENPDRRDSQ*CTRKQ 285
           +NA L    ++ +P  ++  N+T    ++  G++  +  G   V   P RRDS  C R+ 
Sbjct: 68  SNAGLKIAIDLLEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREG 127

Query: 286 RLPES 300
           RLP++
Sbjct: 128 RLPDA 132


>09_02_0203 -
           5746068-5746307,5746469-5746729,5746833-5748239,
           5748588-5748714,5748800-5749119,5749202-5749963,
           5750749-5750898,5751007-5751096,5751196-5751340,
           5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +3

Query: 18  CLRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLL 197
           CL    + +       L+ +N++++    H + Q I CE++   +    G         L
Sbjct: 675 CLEAISDGISTETRTSLDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYL 733

Query: 198 QVQRLDSQESCWCRGEP 248
           Q   L+ + SC   GEP
Sbjct: 734 QDSLLNEKHSCLSCGEP 750


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 70  TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 201
           T++ SS+L WM+I + N  L +  +    FSK P   T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 75  KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 176
           KN ++  L+    +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 189 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 79
           +VSHI+ +  E+  D+AL + EC +  + H  Q   H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397


>08_02_1497 -
           27548328-27548534,27548876-27548978,27549074-27549153,
           27549245-27549327,27549899-27549947,27550028-27550093,
           27550254-27550303,27550762-27550886,27551842-27551954
          Length = 291

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 115 NNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVG--VVEN-PDRRDSQ*CTRKQ 285
           +NA L    ++ +P   +   +T    ++  G++  +  G   VE  P RRDS  C R+ 
Sbjct: 68  SNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREG 127

Query: 286 RLPES 300
           RLP++
Sbjct: 128 RLPDA 132


>08_01_0133 +
           1062365-1063057,1063210-1063318,1063914-1064005,
           1064399-1064560,1064718-1064834,1065029-1065127
          Length = 423

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 78  FYGLNLFLHQTQRAHNVCVDKKDAN 4
           F  +NLF+H+TQ +  V VD KD++
Sbjct: 281 FAEINLFVHRTQFSIKVMVDIKDSD 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,083
Number of Sequences: 37544
Number of extensions: 252028
Number of successful extensions: 590
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)