Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0261.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        47   1e-05
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      42   4e-04
SB_650| Best HMM Match : rve (HMM E-Value=0.00048)                     28   3.7  
SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       27   6.5  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   27   6.5  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   6.5  
SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)                   27   8.6  
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 25/69 (36%), Positives = 37/69 (53%)
 Frame = +3

Query: 246 P*QKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKAXHXRTDLCKAXLRRA 425
           P  KG  +  +K KA  KP K + +      +RR+L  ++ +    + R DL    +RRA
Sbjct: 8   PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 67

Query: 426 SAILRSQRP 452
            AILRSQ+P
Sbjct: 68  CAILRSQKP 76


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 24  RTHCEHVVFGVEIGLN-RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQ 200
           R +C   +F  E   + R NV     D +P+  C PCE + Y+  +Q+G EQ   PP+L+
Sbjct: 38  RKYCNKGLFKGEFQEHWRVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILR 92

Query: 201 VQRLDSQESCWCRGEP 248
                ++E C+C  +P
Sbjct: 93  SWTPHTEEGCFCEAKP 108


>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
          Length = 363

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 42  VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 161
           V  G+E   N +N+ +T    +  P Q  +PC +A Y+  VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280


>SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 76  LRFKPISTPNTTCSQCVRRQKGC 8
           +R+ P S P     QCV R KGC
Sbjct: 566 MRYAPQSIPQNPSFQCVIRNKGC 588


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +3

Query: 198 QVQRLDSQESCWCRGEP*QKGFTVVYKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK 365
           Q Q  +SQ     + +   K     YK AKA  KPAK    L +  +K A A+  L K K
Sbjct: 253 QKQNTNSQMQSTYKHKANYKLAKAKYKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAK 312

Query: 366 -RLLKAXHXRTDLCKAXLRRASA 431
            +L KA H    L KA  + A A
Sbjct: 313 HKLAKAKH---KLAKAKYKLAKA 332


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 27  THCEHVVFGVEIGLNRKNVVVTELDDHPQQQCI 125
           +HC+H++ G E G+   N +   + D   +QC+
Sbjct: 261 SHCKHILIGAEEGIYSLN-ISDHVHDMEMEQCL 292


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 290 YQKAR*KLNPPSIQGWCQEVTV 355
           YQK    LNP S  GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472


>SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)
          Length = 169

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 273 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKAXHXRTDLCKAXLRRASA 431
           YK AKA  KPAK    L +  +K A A+  L K K +L KA H    L KA  + A A
Sbjct: 65  YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 119


>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 219 VNQAVVPEGVEVSHIVRLLAERL--FDIALLHKECIVVADDHPV 94
           VN+ V     ++  +++L   RL   D++L++K CI  A DH V
Sbjct: 138 VNEVVKKSSKKLYFLIQLKRARLPPSDLSLIYKACIRSAVDHAV 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,535
Number of Sequences: 59808
Number of extensions: 298011
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)