Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0261.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.58 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.4  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 109 RNNNAFLVKKRNIKKPFSKEP 171
           R N+  L+KKRN   PF K P
Sbjct: 8   RINSCDLLKKRNENDPFLKRP 28


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 109 RNNNAFLVKKRNIKKPFSK 165
           R N+  L+KKRN   PF K
Sbjct: 129 RINSCDLLKKRNENDPFLK 147


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 222 LVNQAVVPEGVEVSHIVRLLAERLFDIALLHKECIV 115
           L+N A +   V + +   L  +++FDI LL   C++
Sbjct: 88  LINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 480 GLS*PFLL*WASGXXGWLKHD 418
           G+  PFL+ W     GW++ +
Sbjct: 167 GIVQPFLIHWIWTPHGWMRRN 187


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 76  KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
           K+ SSL+   I NNN +     N     +   NN  N     Y  +I+ + + V
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPV 366


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 36  EHVVFGVEIGLNRKNVVVTEL 98
           +  V G  +G N KNV V EL
Sbjct: 243 QEAVPGDNVGFNVKNVSVKEL 263


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 36  EHVVFGVEIGLNRKNVVVTEL 98
           +  V G  +G N KNV V EL
Sbjct: 300 QEAVPGDNVGFNVKNVSVKEL 320


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 176 LFGSLLNGFLILRFFTRNALLL 111
           L G  +NGF + +  +RN + L
Sbjct: 242 LSGDRINGFTVAQTISRNGVRL 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,311
Number of Sequences: 438
Number of extensions: 2448
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)