Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0260.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB7B64 Cluster: PREDICTED: similar to CG11873-PA...    33   3.3  
UniRef50_Q4TB73 Cluster: Chromosome 11 SCAF7185, whole genome sh...    32   7.6  
UniRef50_Q7RAS7 Cluster: Putative uncharacterized protein PY0642...    32   7.6  

>UniRef50_UPI0000DB7B64 Cluster: PREDICTED: similar to CG11873-PA;
            n=1; Apis mellifera|Rep: PREDICTED: similar to CG11873-PA
            - Apis mellifera
          Length = 2273

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 261  HIFLQKQAHVSLTHACATADTRSDLDSVRFVAHAHSLHSYN 383
            H+  QK + V LT+AC T + R +L+ +   AH     S N
Sbjct: 1100 HVSTQKSSQVRLTNACVTTNVRQNLNKISQNAHVQKSLSNN 1140


>UniRef50_Q4TB73 Cluster: Chromosome 11 SCAF7185, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 11 SCAF7185, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 417

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 373 CSEWACATNLTESRSDR-VSAVAHACVSET--CACFCKKMCIFIFSKSNS*LCVC 218
           CS W    + T  R +   S  A  CV     C C C ++C+ +    +  +CVC
Sbjct: 336 CSSWREPWSTTCRRPENGCSGTASVCVCSVGVCVCVCVRVCVCVCESVDVGVCVC 390


>UniRef50_Q7RAS7 Cluster: Putative uncharacterized protein PY06422;
            n=13; Eukaryota|Rep: Putative uncharacterized protein
            PY06422 - Plasmodium yoelii yoelii
          Length = 2649

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 52   GTHNYVNYSANYELTNLQSLKQLHTYRTLMSSHSVRE*SIRYRKTESTDVINLHVNK 222
            G  ++ NY  N    N  ++ +++ Y     S+++    +  + TES   +N +VNK
Sbjct: 1600 GNESFNNYEVNNNEHNYTNMNKINAYSNSHLSNNIESEHVSVQNTESLQNVNKYVNK 1656


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,224,923
Number of Sequences: 1657284
Number of extensions: 8399000
Number of successful extensions: 20752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20704
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)