Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0260.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    28   0.047
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    26   0.19 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   3.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   7.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   7.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   7.1  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 255 KMHIFLQKQAHVSLTHACATADTRSDLDSVRFVAHAHSLHSYNKYT--HSS*QHCIHPCV 428
           +M  FL++    SL  A      R  L S+ F     + +  +K T  H+    CIH  +
Sbjct: 304 EMSNFLKRHTGFSLRPAAGLLTARDFLASLAFRIFQSTQYVRHKNTPYHTPEPDCIHELL 363

Query: 429 GHSP 440
           GH P
Sbjct: 364 GHMP 367


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
 Frame = -2

Query: 394 CVYLLYECSEWACAT-----NLTESRSDRVSAVAHACVSETCACFCKKMC 260
           CVY + E SE  C T     NL +   D +  +   C  E     C+  C
Sbjct: 14  CVYSVSEISEETCETLMSDINLIKEEFDELGRLQRICNGEVAVNKCEGSC 63


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 230 IVCLLTWRLITSVDSVFLYRIDYSRTL*DDISVLYVC 120
           ++CLL W +     S  L    Y      D S+++VC
Sbjct: 189 LICLLAWFIAALFTSPILAITQYGPEEYVDGSIVFVC 225


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 270 LQKQAHVSLTHACATADTRSDLDSVRFVAHAHSLHSYNK 386
           L +Q H S +H+   +++     S++    AH  H  +K
Sbjct: 243 LIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDK 281


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 460 MAAIVLRGECP 428
           +A +VLRG CP
Sbjct: 68  LAPLVLRGSCP 78


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 269 FTETGARLTHTCVRNGRYSIRSRLCE 346
           F+++ +  TH    +G    R RLC+
Sbjct: 59  FSQSSSVTTHMRTHSGERPYRCRLCK 84


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 269 FTETGARLTHTCVRNGRYSIRSRLCE 346
           F+++ +  TH    +G    R RLC+
Sbjct: 315 FSQSSSVTTHMRTHSGERPYRCRLCK 340


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,786
Number of Sequences: 336
Number of extensions: 2278
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)