Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0260.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    28   1.0  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    26   3.2  
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    25   7.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   9.7  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 146  LIVCENNRFDTGRLNRLMLSISMLTNTQLTIAFTKNKNAHFFTETGARLTHTCVRN 313
            LI  +NN F +G L  +   ISM TN+ L++    N N      +G  ++   + N
Sbjct: 886  LIAMDNNGFASGSLY-IDDGISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLAN 940


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 176 TGRLNRLMLSISMLTNTQLTIAFTKNKNAHFFTETGARLTHTCVRNGRYSIRS 334
           T     L+ + +++     ++ +T +   +FF      +TH+ V NG Y+ R+
Sbjct: 183 TSMYTLLLQNTTVVIRRDQSVVYTGDVGTNFFHSPTKWITHSNVSNGYYTSRN 235


>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 215 LTNTQLTIAFTKNKNAHFFTETGARLTHTCVRNGRYSIRSRLCEV 349
           L NT+        K  H+  E GARL    V+ G+    S  C V
Sbjct: 138 LVNTKKLSQGCNRKRKHYQMEVGARLAEAEVKFGQLLQSSIQCRV 182


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 67  VNYSANYELTNLQSLKQLHTYRTLMSSHSVRE 162
           +NY+   E+  L   K LH Y  L+    ++E
Sbjct: 213 INYAETDEIRRLTESKLLHMYNKLLILSEIKE 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,797
Number of Sequences: 5004
Number of extensions: 35788
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)