Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0260.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   32   0.36 
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    28   4.4  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.6  
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 273 QKQAHVSLTHACATADTRSDLDSVRFVAHAHSLHSYNKYTHSS*QHCI----HPCVGHSP 440
           +K+ H  +TH C   D  +   + R   H + +H+Y K  H +  H      H  V H+ 
Sbjct: 32  RKEDHGDVTHTCRKEDHGNVTHTYRKEDHGNVVHTYRKEDHGNVTHTCRKGDHGNVTHTS 91

Query: 441 RK 446
           RK
Sbjct: 92  RK 93



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 273 QKQAHVSLTHACATADTRSDLDSVRFVAHAHSLHSYNKYTHSS*QHCI----HPCVGHSP 440
           +K+ H ++TH C   D      + R   H +  H+Y K  H +  H      H  V H+ 
Sbjct: 20  RKEDHGNVTHTCRKEDHGDVTHTCRKEDHGNVTHTYRKEDHGNVVHTYRKEDHGNVTHTC 79

Query: 441 RK 446
           RK
Sbjct: 80  RK 81


>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 285 HVSLTHACATADTRSDLDSVRFVAHAHSLHSYN--KYTHSS*QHCIHPC 425
           H + TH  A ADT +D  +   V HA +L +    +Y H+  + C H C
Sbjct: 53  HATDTHVDAHADTHADTHA---VTHAGTLQTRTQARYRHACRRTCRHAC 98


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +2

Query: 212  MLTNTQLTIAFTKNKNAHFFTETGARLTHTCVRNGRYSIRSRLCEVRRTRPLTALI 379
            ++   +  IA   + N H  T    R+TH   R   Y  +   C +   RP   L+
Sbjct: 1046 VICQPECNIASLPSSNIHIITGFPIRITHVFERTNNYGTKVTGCNMVSYRPAKGLL 1101


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 257 NAHFFTETGARLTHTCVRNGRYSIRSRLCEVRRTRPLTALIQ*IYTLELTTLHPSVRGTL 436
           NAH   E G +L HT ++ G+ S   +L  ++   P  +++      + T +H  +    
Sbjct: 527 NAHVVVEFGLQLLHTTLKRGKVSTADQL-HLQMLDPFVSMMTKCLQAKHTKVHTLINIIS 585

Query: 437 AAQ 445
            AQ
Sbjct: 586 RAQ 588


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
 Frame = -3

Query: 381 CMSAVSGRVRRTSQSRDLIEYLPLRTHV*VRRAPVSVKKCAFLFLVKAIVNCVFVNMEID 202
           C  A+ G   R    ++  + L ++ HV + R  ++ +   F+   K  + C ++ + + 
Sbjct: 424 CALAIVGA--RLVPRKESTDSLRMKAHVHIARIQLTQR---FVLKKKYYMYCTYICLNLT 478

Query: 201 NISR---FSLPVSNRL--------FSHTMRRHQCSVC 124
             S+   F     N L        + HT RRH CS C
Sbjct: 479 KFSQCRLFGAIFDNSLGKTRYRSQYKHTRRRHPCSTC 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,858
Number of Sequences: 59808
Number of extensions: 312192
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)