Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0260.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81463-1|CAB03850.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical
           protein T16G1.9 protein.
          Length = 945

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 231 NCVFVNMEIDNISRFSLPVSNRLFSHTMR 145
           N +FVN E+    R+ LP +NR   H M+
Sbjct: 492 NYLFVNFEVRTTDRYQLPYTNRELFHMMQ 520


>Z81463-1|CAB03850.1|  342|Caenorhabditis elegans Hypothetical
           protein C06B8.1 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 535 GRRKMTTSXXSCNQTESQPNVISAQMAAIVLRGECPTHG 419
           GR K +T   SC  TES  N +SA+   I+ R     HG
Sbjct: 72  GRDKTSTKAISCISTESTSNSLSAR---IIPRSSLNIHG 107


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 478 NVISAQMAAIVLRGEC-PTHGWMQCC*LECVYLL 380
           N I+ Q   +  R  C P H W QCC   C  +L
Sbjct: 180 NAITMQNREVGSRSVCSPAHRWRQCC-AHCTQIL 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,130
Number of Sequences: 27780
Number of extensions: 221563
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)