Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0260.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    26   0.29 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 267 FLQKQAHVSLTHACATADTRSDLDSVRF---VAHAHSLHSYNKYTHSS*QHCIHPCVGHS 437
           FL+K    +L  A     +R  L S+ F    +  +  H  + Y H+    CIH  +GH 
Sbjct: 286 FLKKNTGFTLRPAAGLLTSRDFLSSLAFRVFQSTQYIRHIKSPY-HTPEPDCIHELLGHM 344

Query: 438 P 440
           P
Sbjct: 345 P 345


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 294 VRRAPVSVKKCAF-LFLVKAIVNCVFVNMEIDNISRFSLPVSNR 166
           +RRA  S+   +  LFL+  + NCV V   I +++  ++ +S +
Sbjct: 591 LRRALASLMVFSLGLFLLLDMFNCVVVEETIPSLNSTNVTLSTK 634


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 37  EII*LGTHNYVNYSANYELTNL 102
           +II    +NY NY+ NY    L
Sbjct: 302 KIISSNNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 37  EII*LGTHNYVNYSANYELTNL 102
           +II    +NY NY+ NY    L
Sbjct: 313 KIISSNNYNYKNYNNNYNSKKL 334


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -2

Query: 376 ECSEWACATNLTESRSDRVSAVAHACVSETCACFCKKMCIFIFSKSN 236
           +CS+   A  +   + DR+  +    V+ T      K+ +F    SN
Sbjct: 118 DCSKIVSAFKIAIDKFDRLWVLDSGLVNRTVPVCAPKLHVFDLKTSN 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,399
Number of Sequences: 438
Number of extensions: 2801
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)