Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0259.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216...    27   7.5  
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215...    27   7.5  
02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789...    27   9.9  
01_06_1321 + 36280691-36281269                                         27   9.9  

>02_01_0321 -
           2162015-2162134,2162763-2162846,2162931-2163011,
           2163690-2163867,2163946-2164089,2164194-2164240,
           2164520-2164576,2165286-2165408,2165496-2165618,
           2165959-2166072,2166169-2166176,2166272-2166458,
           2174597-2174763,2174924-2175008,2176632-2176820,
           2177727-2177918,2178434-2178634
          Length = 699

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 384 IIVRYPLPLSVSAALQSLLIFEEI 455
           ++V YP P   S+ LQ+L++F+E+
Sbjct: 493 MVVDYPYPECTSSVLQALVLFKEL 516


>02_01_0319 -
           2148788-2148892,2149474-2149557,2149643-2149723,
           2150303-2150480,2150811-2150954,2151048-2151094,
           2151353-2151409,2151566-2151664,2151867-2151989,
           2152083-2152205,2152594-2152707,2152972-2153160,
           2153412-2153578,2153904-2153988,2155431-2155628,
           2155978-2156175
          Length = 663

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 384 IIVRYPLPLSVSAALQSLLIFEEI 455
           ++V YP P   S+ LQ+L++F+E+
Sbjct: 462 MVVDYPYPECTSSVLQALVLFKEL 485


>02_05_0882 +
           32477306-32478189,32478735-32478819,32478930-32478992,
           32479177-32479334,32479460-32479535,32479622-32479681,
           32479978-32480082,32480450-32480629
          Length = 536

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 505 PSNQQKKALVMRHSYTXISSNMSKDCKAALTDNGNGYRTMITNF 374
           P  Q  +   MRHSYT    + S D      D+G G     T+F
Sbjct: 7   PQAQLARINAMRHSYTAAGDDGSGDDVCGELDDGGGEYASQTSF 50


>01_06_1321 + 36280691-36281269
          Length = 192

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 122 TKLVHQDTPPAVAAAIYLXLYSIPIVIEDP 33
           T + HQ  PPA+AAA  + L ++ +++  P
Sbjct: 2   TPVSHQLVPPALAAAFGIDLAAVGVLLPSP 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,625
Number of Sequences: 37544
Number of extensions: 287468
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)