Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0259.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23)                    28   4.4  
SB_42410| Best HMM Match : Vps53_N (HMM E-Value=0)                     28   5.8  
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2)                      28   5.8  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   27   7.6  

>SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23)
          Length = 313

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 237 QKVAERRNLPHFSSNKFNDYRAVWQVAPSYCNHMFVISITYILGHKKFVI 386
           Q +AER N+     +  +D   VW+V   Y   +  ++ITY+L     ++
Sbjct: 202 QAIAERVNVHRHDLHTIDDNNPVWKVVGYYLGAL-CLNITYLLSPNLIIL 250


>SB_42410| Best HMM Match : Vps53_N (HMM E-Value=0)
          Length = 624

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 481 LVMRHSYTXISSNMSKDCKAALTDNGNGYRTMITNFLWPRIYV 353
           LV R +YT    N+SKD K       + +  MI+    P +++
Sbjct: 235 LVQRFAYTLEEENLSKDPKLPANPKSSKFLGMISRCFEPHLHI 277


>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = -3

Query: 186 HPEVQ-HTRAL-RELSP-VYTKMSYKIGPSGYT 97
           +P+++ H   + R LSP +YTK+  K+ P+GYT
Sbjct: 394 YPDLRTHNNCMARHLSPRLYTKLKDKVTPNGYT 426


>SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2)
          Length = 816

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 270 FSSNKFNDYRAVWQVA-PSYCNHMFVISITYILGHKKFVIIVRYPLPLSVSAALQSLLIF 446
           FSS  F D   +  ++ P +C      ++ YI+ + K    +  PLP + S+  +S+   
Sbjct: 233 FSSATFFDVAVLRCLSSPGWCEEGVYWALQYIIDYLKREFDIPDPLPKATSSMNRSVSCC 292

Query: 447 EEIXV 461
           EEI V
Sbjct: 293 EEIGV 297


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 312 VAPSYCNHMFVISITYILGHKKFVIIVRYPLPLSVSAALQSLLIFEE 452
           V P Y   +  + +  +LG  KFV+ V   L L +    QS+L+F E
Sbjct: 28  VPPVYSPELLAMPVYLLLGFYKFVVTV--TLLLVLQGVTQSVLLFVE 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,879
Number of Sequences: 59808
Number of extensions: 332326
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)