Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0259.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b prot...    31   0.72 
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    27   8.9  
AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    27   8.9  

>AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b protein
           protein 47 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 1   VILPQFLFYFKGSSMTIGMEYNXRYMAAATAG 96
           + LP + FY KGS+  I + +N +++A +++G
Sbjct: 58  IFLPDYHFYLKGSAKFIFIPHNRKFIARSSSG 89


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 74   IWPPRLQVVYPDGPILY 124
            +W PR  V+YPD P +Y
Sbjct: 1659 LWVPRFFVLYPDSPKVY 1675


>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +3

Query: 285 FNDYRAVWQVAPS--YCNHMFVISITYILGHKKFVIIVRYPLPLSVSAALQSLLIFEEIX 458
           F   R  W+   S  Y    F +  T+ + H K   I+R   P  V   L   LI+  I 
Sbjct: 32  FYSKRIAWKSELSLIYTRFAFDMFYTFFVPHNKIYYIIRQIFPGFVVKNLSFYLIWPTIP 91

Query: 459 V*L*RITKAFFCWLD 503
           +   R T  F   LD
Sbjct: 92  LGCIRATLVFLITLD 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,717,975
Number of Sequences: 27780
Number of extensions: 245351
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)