Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0259.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.2  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 286 NLLDEKCGRFRRSATFCG 233
           NL+D KC +     T CG
Sbjct: 117 NLIDTKCYKLEHPVTGCG 134


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 286 NLLDEKCGRFRRSATFCG 233
           NL+D KC +     T CG
Sbjct: 122 NLIDTKCYKLEHPVTGCG 139


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 286 NLLDEKCGRFRRSATFCG 233
           NL+D KC +     T CG
Sbjct: 122 NLIDTKCYKLEHPVTGCG 139


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 SYKRGSIHEEPEYVELQGG 188
           S +RG++H +P  VE   G
Sbjct: 27  SSQRGNVHNDPLVVETTSG 45


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 SYKRGSIHEEPEYVELQGG 188
           S +RG++H +P  VE   G
Sbjct: 27  SSQRGNVHNDPLVVETTSG 45


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 201 TTVYCHPEVQHTRALRELS 145
           T+ YC P+V      REL+
Sbjct: 268 TSTYCEPQVVIVSPTRELT 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,977
Number of Sequences: 438
Number of extensions: 3204
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)