Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0258.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5HZ17 Cluster: Exonuclease; n=4; Clostridium botulinum...    33   4.7  
UniRef50_A1ZZU8 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  

>UniRef50_A5HZ17 Cluster: Exonuclease; n=4; Clostridium
           botulinum|Rep: Exonuclease - Clostridium botulinum A
           str. ATCC 3502
          Length = 1176

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +1

Query: 7   TTKPNLRRLKRILPEIKRKRKKLTXEILTERTKLLSAKKNNLLE*IKVRAATLGIPRSQT 186
           T    LR +   L  I+ + KK + E   E+  LL  K+NNLL+ I+++     I R + 
Sbjct: 311 TAMEQLRNIDLNLKNIEEEYKKAS-EDKEEKIPLLMQKENNLLQAIEIKKKVEVIKRERA 369

Query: 187 NLAEK 201
           +L +K
Sbjct: 370 DLVQK 374


>UniRef50_A1ZZU8 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 1130

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 7   TTKPNLRRLKRILPEIKRKR---KKLTXEILTERTKLLSAKKNNLLE 138
           TT    +R     PE+K+K    KKL  E+L E TK L  +   LLE
Sbjct: 565 TTNQKQKRFSETSPEVKQKMQQLKKLMDELLDEETKKLYEELQKLLE 611


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,768,308
Number of Sequences: 1657284
Number of extensions: 3615969
Number of successful extensions: 7553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7550
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)