Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0258.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    25   6.3  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   8.4  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 13  KPNLRRLKRILPEIKRKRKKLTXEILTERTKLLSAKKNNLLE 138
           + N R  K+++ E  RK++++   ILT+R      KK++  E
Sbjct: 57  RENARMRKKVIEE-NRKKEEIEERILTDRILQQERKKSHANE 97


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 198 FGQICLTPRNPESCCPXFDS 139
           FG IC T  N ES C   +S
Sbjct: 101 FGHICFTVDNIESACAYLES 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,269
Number of Sequences: 5004
Number of extensions: 16418
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)