Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0256.Seq
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   2.3  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   3.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   3.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.1  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.1  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 148 SSCQTKPALAMVINDNIKRN 89
           ++C TK AL   +ND +K N
Sbjct: 358 ATCGTKNALLHAVNDAMKAN 377


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 240 SFPSPTTLRKLNHNPDKP 293
           S PSP+T   L+ NP  P
Sbjct: 131 SIPSPSTTDDLSTNPTPP 148


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/10 (70%), Positives = 9/10 (90%), Gaps = 1/10 (10%)
 Frame = +1

Query: 328 GN-YGCKHQW 354
           GN YGC+H+W
Sbjct: 374 GNGYGCEHRW 383


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 190 RSQRFRHSIPKFRTLLFRSPLLQH 261
           ++Q+ R   PK  T + R+ L QH
Sbjct: 177 KNQKKRGIFPKVATNILRAWLFQH 200


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 86  EVSFYVVINHHRERWLC 136
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 86  EVSFYVVINHHRERWLC 136
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 86  EVSFYVVINHHRERWLC 136
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 86  EVSFYVVINHHRERWLC 136
           E   YV  +   +RWLC
Sbjct: 828 EARHYVQYDQGEDRWLC 844


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 451 SXMTVT*F*IFYLLGLALRFFGILSKL 371
           S  TVT   ++  L + L  +G+LS+L
Sbjct: 284 SGYTVTFLCLYLFLIITLTIYGLLSQL 310


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 190 RSQRFRHSIPKFRTLLFRSPLLQH 261
           ++Q+ R   PK  T + R+ L QH
Sbjct: 333 KNQKKRGIFPKVATNILRAWLFQH 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,021
Number of Sequences: 336
Number of extensions: 2589
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)