Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0256.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.2  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   9.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.5  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   9.5  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 247  GNEKAKFGILGSNGGIVGICIEGHISLGN 161
            GN     GILG    IVG+ ++G  ++GN
Sbjct: 1164 GNSSLVEGILGQTASIVGMPLKGISTVGN 1192


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 144 DDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAF-SFP 248
           D  +  +P+  W S  + T  P DP++P  AF  FP
Sbjct: 817 DLGYEHYPTCPWISDLLKTYFPQDPEVPFLAFPDFP 852


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 156  PGFPSDMWPSIQIPT----IPPFDPKIPNFAFSFPSPTT 260
            PG PS+  P +  P     + P  PK P    + P+P++
Sbjct: 1436 PGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSS 1474


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 228 NFAFSFPSPTTLRKLNHNPDKPIAAST*AAMEGRELWLQ 344
           N+ FS+P     RK   +  + +A    +A E   LW +
Sbjct: 96  NYDFSYPGTFVYRKAASSSHETLATKVVSADESARLWAE 134


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 192 IPTIPPFDPKIPNFAFSFPSPTTLRKLNHNPDKPIAAST 308
           +P+ PPF   + N  F+  +        HN + P   S+
Sbjct: 20  VPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSS 58


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 145 TITFRDSQAICGPLYRSQRF-RHSIPKFRTLL 237
           +I   D   +CGP  ++QRF RH   K    L
Sbjct: 155 SIECTDEDNVCGPSCQNQRFQRHEFAKVDVFL 186


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 225 PNFAFSFPSPTTLRKLNHNPDK 290
           P F+F+F  P T  K N  P+K
Sbjct: 721 PQFSFNFTKPNTDAKTNLLPEK 742


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 155 SGIPKRYVALYTDPNDSAIRSQNSELCFFVPLSYNIKKTK 274
           S  PK+Y +L   P  S +  +  E C  + L+  +++TK
Sbjct: 307 SDFPKKYKSLRVVPAYSNLIKEKFERCLDLYLAPRVRRTK 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,250
Number of Sequences: 5004
Number of extensions: 44612
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)