Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0256.Seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 32 0.33
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 30 1.3
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675... 29 1.8
12_02_0299 - 17051570-17052474,17053542-17053755 28 5.4
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 5.4
12_02_0671 + 21725663-21726046 27 7.2
07_01_0696 - 5261008-5263128 27 7.2
04_04_1621 + 34842062-34842066,34842270-34842921 27 7.2
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703... 27 7.2
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 27 7.2
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 27 9.5
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 120 ASAGFVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPTT 260
A GF+W + P + + W +Q P +P +F F F + T
Sbjct: 209 APEGFIWYNGTSPVYRNGPWDGLQFSGEPEMEPNNTSFRFEFVANRT 255
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 156 PGFPS-DMWPSIQIPTIPPFDPKIPNFAFSFPSPTTLRKLNHNPDKPIAAST*AAMEGRE 332
PG P P+IQIP +PP P +P+ + + SP ++ + +AA+ A + E
Sbjct: 107 PGLPQLPTLPTIQIPELPPL-PPLPSVSITPGSPGAPARIPISSQSALAAAPIAPQQPTE 165
>06_01_0881 +
6754600-6754681,6754742-6755284,6755461-6755523,
6755653-6755666
Length = 233
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 156 PGFPS-DMWPSIQIPTIPPFDPKIPNFAFS 242
PG P P+IQIP +PP P +P+ + +
Sbjct: 66 PGLPQLQPLPTIQIPELPPLPPLLPSVSIT 95
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +3
Query: 141 QDDNFPGFPS-DMWPSIQIPTIPPFDP----KIPNFAFSFPSPT 257
Q PG P P+IQIP +PP P +IP P PT
Sbjct: 33 QTIQIPGLPPLPPLPTIQIPCLPPLQPLPTIQIPGLPQLQPLPT 76
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 153 FPGFPSDMWPSIQIPTI--PPFDPKIPNFAFSFPSPTTLRKLNHNPDKP 293
+P P +P +P I PP P P AF FP P L L H P P
Sbjct: 267 WPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFP-QLPPLPHFPPLP 314
>11_06_0458 +
23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 328 LPSIAAHVDAAIGLSGLWFSFLNVVGEGNEKAK-FGILGSNG 206
LP++ A +DA +G+ G + + +G ++ K I+GS G
Sbjct: 207 LPALYAELDALVGIDGPRDEIIKSLDDGEQRMKVVSIVGSGG 248
>12_02_0671 + 21725663-21726046
Length = 127
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 262 NVVGEGNEKAKFGILGSNG---GIVGICIEGHISLGNPGKLSS 143
++ G G+ + G+L + G G VG C+EG G G+L S
Sbjct: 26 SLAGGGDRHLQLGMLSTGGECRGTVGECLEGGDVDGEEGELGS 68
>07_01_0696 - 5261008-5263128
Length = 706
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +2
Query: 104 VINHHRERWLCLAGR*LSGIPKRYVALYTDPNDSAIR-SQNSELCFFVPLSYNIKKTKPQ 280
++NHH + +A SG A+ PNDS S E VPL Y +
Sbjct: 568 MVNHHDDSVSDIADHGCSGSVPPPSAVVDLPNDSDQSCSGYYEAELKVPLEYAARNPVDS 627
Query: 281 PGQTYSGVYVSSNGGKGTMVAN 346
P + + V ++ G G+M+++
Sbjct: 628 PAKGGNEAEVDASNGAGSMMSS 649
>04_04_1621 + 34842062-34842066,34842270-34842921
Length = 218
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 123 SAGFVWQDDNFPGFPSDMWPSIQIP 197
+A +W+ + PG SD+W SI++P
Sbjct: 82 AASMLWRTPDVPG-ASDVWDSIEVP 105
>01_05_0540 +
23069954-23070103,23070170-23070251,23070298-23070355,
23071276-23071318,23072262-23073341,23073448-23073509,
23073759-23073855,23074703-23074984,23075073-23075147,
23075223-23075276,23075373-23075515,23076567-23076858
Length = 805
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 98 YVVINHHRERWLCLAGR*LSGIPKRYVALYTDPNDSAIRSQNSELCFFVPLSYNIKKTKP 277
++V H++ +WLC +SG Y+ T D +N L V S I+ K
Sbjct: 166 FLVYMHYKGKWLCALIEGISGYLNGYITRSTGKIDDLRIRENGYL--GVTKSEFIEHAKK 223
Query: 278 QPGQTYSGVYVSSNGGK 328
P + G YV+++ K
Sbjct: 224 LP---WDGAYVTAHQAK 237
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 317 NGGKGTMVANINGEVIEKKFGED 385
N G++ + GEVIEK FGE+
Sbjct: 789 NTVNGSLRVTVQGEVIEKSFGEE 811
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 202 IVGICIEGHISLGNPGKLSSCQTKPALAMVINDNIKRNFVNAIIRRLKGF 53
+V I +E +++ + GKL + P A + N+ + +V + RLKG+
Sbjct: 550 LVNIAVEDSVNIDDDGKLLIREMLPYEAENVMANLVKAWVKERVDRLKGW 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,510,756
Number of Sequences: 37544
Number of extensions: 285484
Number of successful extensions: 784
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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