Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0256.Seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    23   4.3  
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 23.4 bits (48), Expect(2) = 4.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 355 PIDVCNHSSLPSIAAHVDAAIGLSGLWFSFLNVVGEGNEKAKFGILGSNG 206
           P++ CNH+SL     +  A IG S        +  E   KA   + GS G
Sbjct: 429 PLEWCNHTSLEPSGKYKIAVIGNSWAANHGALIHDECGRKANTILQGSAG 478



 Score = 23.0 bits (47), Expect(2) = 4.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 187 IEGHISLGNPGKLSSCQTKP 128
           I  +IS+GNPG +++ +  P
Sbjct: 515 ISRYISVGNPGNITNFEEDP 534


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -1

Query: 283 GLWFSFLNVVGEGNEKAKFGILGSNGGIVGICIEGHISLGNPGKLSSCQTKPALAMVIND 104
           G+  S +NV  E N ++K+   GSN      C E  IS+ N  +L       A  + + +
Sbjct: 76  GISTSLINVQREHNNRSKYDTWGSNS-----CSEPRISISNIERLEKPSYHEARRVPVFE 130

Query: 103 NIKRN 89
            ++R+
Sbjct: 131 RLERS 135


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 141 QDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAF-SFPSPTTLRKLN 275
           Q+  FP FP+       +PT+P   P +  F F + P PTT++ LN
Sbjct: 229 QNSMFPTFPT-------MPTLPTL-PTLAPFTFPTLPPPTTMKPLN 266


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 238 KAKFGILGSNGGIVGICIEGHISLGNPGK 152
           K KF        I  ICIE H   G+PG+
Sbjct: 75  KGKFAFTADEYDIFEICIENHPPAGHPGE 103


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical protein
            K09H11.3 protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/74 (21%), Positives = 35/74 (47%)
 Frame = +3

Query: 189  QIPTIPPFDPKIPNFAFSFPSPTTLRKLNHNPDKPIAAST*AAMEGRELWLQTSMGK*SK 368
            + P     +P+ P+  F  P     +K+N +   P+A    ++     +  ++++ +   
Sbjct: 871  EFPVAAAGEPEEPSTQFKLPQLPMPKKMNRSGISPLARQAHSSKSTLSVPNRSNLRE--T 928

Query: 369  KSLERIPKNLRASP 410
            KS+E  P  LR++P
Sbjct: 929  KSIEETPTALRSAP 942


>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 181 PLYRSQRFRHSIPKFRTLLFRSPLL 255
           PL +++  R S+PKF  LL+ SP++
Sbjct: 58  PLRKAEIIRGSLPKFINLLWLSPII 82


>AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6B3B.12 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -3

Query: 239 KSKVRNFGIE--W---RNRWDLYRGPHIAWESRKVIVLPNKA 129
           KS +    +E  W    NR +  + P +AWE RK +  PN A
Sbjct: 72  KSLIETINVEKQWDQDENRQEQIKRPSVAWEVRKSMSSPNPA 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,697,452
Number of Sequences: 27780
Number of extensions: 245411
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)