Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0256.Seq
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32680.1 68415.m03995 disease resistance family protein conta... 33 0.16
At5g01790.1 68418.m00098 expressed protein 31 0.37
At1g80830.1 68414.m09483 NRAMP metal ion transporter 1 (NRAMP1) ... 30 0.85
At2g28370.1 68415.m03448 expressed protein contains Pfam PF04535... 29 1.5
At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family... 28 3.4
At5g35080.1 68418.m04151 expressed protein 27 6.0
At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein co... 27 6.0
At5g13140.1 68418.m01505 expressed protein 27 7.9
At4g20650.1 68417.m03004 receptor-like protein kinase-related co... 27 7.9
At4g20640.1 68417.m03003 receptor-like protein kinase-related re... 27 7.9
At4g20630.1 68417.m03002 receptor-like protein kinase-related re... 27 7.9
At4g20620.1 68417.m03001 receptor-like protein kinase-related re... 27 7.9
At4g20610.1 68417.m03000 receptor-like protein kinase-related re... 27 7.9
At4g20600.1 68417.m02999 receptor-like protein kinase-related re... 27 7.9
At4g20590.1 68417.m02998 receptor-like protein kinase-related re... 27 7.9
At4g20580.1 68417.m02997 receptor-like protein kinase-related re... 27 7.9
At4g20570.1 68417.m02996 receptor-like protein kinase-related re... 27 7.9
At4g20560.1 68417.m02995 receptor-like protein kinase-related re... 27 7.9
At4g20550.1 68417.m02994 receptor-like protein kinase-related re... 27 7.9
At4g20540.1 68417.m02993 receptor-like protein kinase-related re... 27 7.9
At4g20530.1 68417.m02992 receptor-like protein kinase-related ki... 27 7.9
At3g25020.1 68416.m03127 disease resistance family protein conta... 27 7.9
At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' ... 27 7.9
>At2g32680.1 68415.m03995 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 890
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 412 LGLALRFFGILSKLFFDHFPIDVCNHSSLPSI 317
L L+++ FG+ S F P+ +CN SSL +I
Sbjct: 481 LPLSIKGFGVASNSFTSEIPLSICNRSSLAAI 512
>At5g01790.1 68418.m00098 expressed protein
Length = 188
Score = 31.5 bits (68), Expect = 0.37
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 132 FVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFS 242
F W+ + PG P PS ++PT+PP P +F+FS
Sbjct: 57 FEWE--SHPGTPKH--PSSELPTLPPLTPPPSHFSFS 89
>At1g80830.1 68414.m09483 NRAMP metal ion transporter 1 (NRAMP1)
identical to NRAMP1 protein [Arabidopsis thaliana]
gi|7108911|gb|AAF36535; member of the natural
resistance-associated macrophage protein (NRAMP) metal
transporter family, PMID:11500563
Length = 532
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 230 LCFFVPLSYNIKKTKPQPGQTYSGVYVSSNGGKG 331
+CFFV L Y+ KP PG+ G++V G G
Sbjct: 194 ICFFVELHYS----KPDPGEVLHGLFVPQLKGNG 223
>At2g28370.1 68415.m03448 expressed protein contains Pfam PF04535 :
Domain of unknown function (DUF588); similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 179
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 415 LLGLALRFFGILSKLFFDHFPIDVCNHSSLPSIAA--HVDAAIGLSGLWFSFLNVV 254
LLGLALRFF LF + + S PS+ A ++ AA GL LW L +V
Sbjct: 39 LLGLALRFFQF---LFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLALAMV 91
>At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 116
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 180 PSIQIPTIP-PFDPKIPNFAFSFPSPTT 260
PS+ P +P PF IP F FP PT+
Sbjct: 64 PSLFPPFVPSPFPGNIPRLPFPFPFPTS 91
>At5g35080.1 68418.m04151 expressed protein
Length = 282
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 75 MAFTKFLFMLSLITIASAGFVWQDDNFP 158
M T+ L L ++ ++S+ VW D FP
Sbjct: 1 MRITQILLCLVIVALSSSSHVWSDQIFP 28
>At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein
contains similarity to endo-b-N-acetylglucosaminidase
GI:13774138 from [Mucor hiemalis]
Length = 631
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 195 PTIPPFDPKIPNFAFSFPSPT 257
P+ PPFDP P+ SFP T
Sbjct: 8 PSPPPFDPTKPSTPISFPIKT 28
>At5g13140.1 68418.m01505 expressed protein
Length = 267
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 117 IASAGFVWQDDNFPGFPS-DMWPSIQIPTIPPFDPKIPNFAFSFPSPTT 260
+A F W + P P+ +PS P++P +P + AF + +P T
Sbjct: 204 LAPYWFPWPYPDLPPLPTLPPFPSFPFPSLPFGNPNLALPAFDWKNPVT 252
>At4g20650.1 68417.m03004 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function; receptor-like protein kinase homolog RK20-1,
Phaseolus vulgaris, gb:AF078082; does not contain a stop
codon. contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069
Length = 382
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20640.1 68417.m03003 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20630.1 68417.m03002 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20620.1 68417.m03001 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20610.1 68417.m03000 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20600.1 68417.m02999 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20590.1 68417.m02998 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20580.1 68417.m02997 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20570.1 68417.m02996 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20560.1 68417.m02995 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20550.1 68417.m02994 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20540.1 68417.m02993 receptor-like protein kinase-related
receptor-like protein kinase homolog RK20-1, Phaseolus
vulgaris, gb:AF078082 contains Pfam profile: PF01657
Domain of unknown function that is usually associated
with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At4g20530.1 68417.m02992 receptor-like protein kinase-related
kinase like proteins, Arabidopsis contains Pfam profile:
PF01657 Domain of unknown function that is usually
associated with protein kinase domain Pfam:PF00069
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 76 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLFRS 246
W R F CC R +FG + FR S +C P F + TL ++
Sbjct: 207 WILRKFPQCC--DGKRGGRVFGTSCNFRKSIEVCSPSGFDSNFFFELHSLDTLFVQA 261
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 412 LGLALRFFGILSKLFFDHFPIDVCNHSSL 326
L L++ +F + F P+ +CN SSL
Sbjct: 481 LPLSINYFSAIDNRFGGDIPLSICNRSSL 509
>At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5'
fragment contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611 (19 copies); contains
similarity to GB:AAD13301 from [Lycopersicon esculentum]
Length = 681
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 412 LGLALRFFGILSKLFFDHFPIDVCNHSSL 326
L L++ +F + F P+ +CN SSL
Sbjct: 513 LPLSINYFSAIDNRFGGDIPLSICNRSSL 541
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,641
Number of Sequences: 28952
Number of extensions: 235604
Number of successful extensions: 760
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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